Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0812
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.28 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    29   0.64 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.85 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   3.4  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.9  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 211  DDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYE-MFDKVDKFLQSHTLRVKVPEEITK 387
            ++ I I++D+S+ +T  V+D+  A+  + +D   E   D ++K        VK  E +T 
Sbjct: 884  EENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTT 943

Query: 388  SAASEYVP 411
               +  +P
Sbjct: 944  LEETIEIP 951


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 223 KITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASE 402
           K+ E +   K   VE +      L++ P   M +KV K       + KV E     A +E
Sbjct: 94  KVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK-------KPKVSE-----AHNE 141

Query: 403 YVPRSLLTDLPSELDMPLDGEDE 471
            +    +  + +ELD+P+ G+DE
Sbjct: 142 EISPENVETIENELDLPVKGKDE 164


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 301  DPAYEMFDKVDKFLQSHTL----RVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGED 468
            D +Y  FD +    ++H +     V V   IT +   EY+ +   T L  ++ +  DG+D
Sbjct: 1018 DCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKD 1077

Query: 469  EAEVVE 486
              E+ E
Sbjct: 1078 REEIGE 1083


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 181  TLQWISSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLR 360
            TL   SS AND+  ++T  +++  T T + D+SA   +       + D  D  L+ +  R
Sbjct: 1232 TLDGNSSSANDNTQELTNVVNVALTSTGDLDDSA---IVSKLNQILSDFRDDLLEHNVRR 1288

Query: 361  VK-VPEEITKSAASEY 405
            V  V   I KSA   Y
Sbjct: 1289 VTIVGGRINKSAYPSY 1304


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 187 QWISSVANDDEIKITEDL 240
           Q+I ++ NDDE+ +TE++
Sbjct: 282 QYIKNILNDDELHLTEEV 299


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 254 VFTIERSSVILISSSLATDEIHCRVLGFTHSTE 156
           + ++  S +I+ISSSL +DEI+   L F    E
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLFLRKLE 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,809
Number of Sequences: 5004
Number of extensions: 50618
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)