Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0812
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z75550-6|CAA99930.1|  591|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical p...    29   3.2  
AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate o...    29   3.2  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z73906-12|CAE17767.1|  170|Caenorhabditis elegans Hypothetical p...    28   5.6  
U88311-9|AAB42349.3|  407|Caenorhabditis elegans Kinesin cargo a...    27   9.8  
U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        27   9.8  
DQ178243-1|ABA18182.1|  407|Caenorhabditis elegans kinesin 1 car...    27   9.8  
AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5 prot...    27   9.8  
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    27   9.8  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 340 LQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPL--DGEDEAEVVEG 489
           L   T+RV++ +E   +    YVP   L  LP EL+     +G+ EA+++ G
Sbjct: 81  LADSTVRVQI-DEPESAIRKRYVPNPALVSLPEELEFSSVENGDQEAKIIGG 131


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 340 LQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPL--DGEDEAEVVEG 489
           L   T+RV++ +E   +    YVP   L  LP EL+     +G+ EA+++ G
Sbjct: 95  LADSTVRVQI-DEPESAIRKRYVPNPALVSLPEELEFSSVENGDQEAKIIGG 145


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +1

Query: 91  ASATYPASKLVKNIYNECLSQYSVECVKPRTLQWISSVANDDEIKITEDLSIVKTGTVED 270
           AS  YP +   +NI+N    Q  +    P  + W ++    D     + L+ +K GT++ 
Sbjct: 318 ASFKYPIN-YYRNIFNAKKQQADLVLEMPTLIIWGTADGALDIEAAVDSLNTLKQGTMKK 376

Query: 271 DESADPRLAKDPAYEMFDKVDKFLQSH 351
            E A   + +D    + + + KFL  +
Sbjct: 377 IEGASHWVQQDEPEMVNEHIKKFLNKY 403


>Z75550-6|CAA99930.1|  591|Caenorhabditis elegans Hypothetical
           protein T22C1.8 protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 256 GTVEDDESADPRLAKDPAYEMFDKVDK 336
           G  +DD+ A  RLAK P+ E  D+ DK
Sbjct: 9   GNSQDDQQASRRLAKKPSDEKVDEKDK 35


>U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical
           protein F18E3.7a protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 357 KSMTLEKLVHFVEHFVGRILGQSRVGRFIILNCSGLHDRKIFSD 226
           K++ LE+ + F +  V  +   +  G  +I+NC+GL+  K+  D
Sbjct: 151 KNLLLEQKIEFKQQEVTSLDAVADAGYDVIVNCAGLYGGKLAGD 194


>AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 357 KSMTLEKLVHFVEHFVGRILGQSRVGRFIILNCSGLHDRKIFSD 226
           K++ LE+ + F +  V  +   +  G  +I+NC+GL+  K+  D
Sbjct: 151 KNLLLEQKIEFKQQEVTSLDAVADAGYDVIVNCAGLYGGKLAGD 194


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 ECLSQYSVECVKPRTLQWISSVANDDEIKITEDLSIVK 252
           EC     + CVKPRTL+ I    N DE +  E   IV+
Sbjct: 301 ECQMAEMLSCVKPRTLEKIVLQKNYDENQTIELKEIVQ 338


>Z73906-12|CAE17767.1|  170|Caenorhabditis elegans Hypothetical
           protein D2030.12 protein.
          Length = 170

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
 Frame = +1

Query: 145 LSQYSVECVKPRTLQWISSVANDDEIKI-----TEDLSIVKTGTVEDDESADPRLAK--D 303
           LS + + C+  +   WI S+ N    ++     TED    K+  V  DE     L K  +
Sbjct: 71  LSAFGIRCLVFKARDWIHSIENKPSPQVILLMPTEDGKYRKSSKVYTDEQTRQILDKLRE 130

Query: 304 PAYEMFDKVDKFLQSHTLRVKVPEEITKSAASEYVP 411
            + E+F +  +     T R + P+   +S  +  VP
Sbjct: 131 DSIELFSESVRASSMETRRNRPPKLSERSFKNWKVP 166


>U88311-9|AAB42349.3|  407|Caenorhabditis elegans Kinesin cargo
           adaptor protein 1 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 615 ASPHRSEDLEGSYSWSHFPWFIW 683
           ASPH S D++G   +  F WF+W
Sbjct: 44  ASPHTS-DVQGVSFFRPFSWFVW 65


>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +1

Query: 16  VKQNRXQ*ATVKMARIIVLL-SIVAFASATYPASKLVKNIYNECLSQYSVECVKPRTLQW 192
           + QNR    T  +A I+  + S++   +   PA+ L   +Y E   +Y     +     W
Sbjct: 91  ILQNRWS-PTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149

Query: 193 ISSVANDDEIKITEDLSIVKTGTVEDDESADPRL 294
           ++   N+ +  + +D+ I +      +++ D R+
Sbjct: 150 LNFGENEGDAVLKDDVEIEEIAAPGANDADDDRM 183


>DQ178243-1|ABA18182.1|  407|Caenorhabditis elegans kinesin 1 cargo
           adaptor alternativevariant a protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 615 ASPHRSEDLEGSYSWSHFPWFIW 683
           ASPH S D++G   +  F WF+W
Sbjct: 44  ASPHTS-DVQGVSFFRPFSWFVW 65


>AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical
           protein Y66A7A.5 protein.
          Length = 685

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 250 KTGTVEDDESADPRLAKDPAYEM 318
           K+  +EDD+   PRLAK P  EM
Sbjct: 647 KSPKLEDDDDPPPRLAKMPRLEM 669


>AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5
           protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 250 KTGTVEDDESADPRLAKDPAYEM 318
           K+  +EDD+   PRLAK P  EM
Sbjct: 700 KSPKLEDDDDPPPRLAKMPRLEM 722


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +1

Query: 16  VKQNRXQ*ATVKMARIIVLL-SIVAFASATYPASKLVKNIYNECLSQYSVECVKPRTLQW 192
           + QNR    T  +A I+  + S++   +   PA+ L   +Y E   +Y     +     W
Sbjct: 91  ILQNRWS-PTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149

Query: 193 ISSVANDDEIKITEDLSIVKTGTVEDDESADPRL 294
           ++   N+ +  + +D+ I +      +++ D R+
Sbjct: 150 LNFGENEGDAVLKDDVEIEEIAAPGANDADDDRM 183


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 121 VKNIYNECLSQYSVEC---VKPRTLQWISSVANDDEIKITEDLSIV 249
           VK  ++EC++    +     K   L+W+S  +  D++ I EDL ++
Sbjct: 98  VKKQFSECITPIVNQWKGRAKEMNLEWVSKASICDKLPIFEDLKVI 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,370
Number of Sequences: 27780
Number of extensions: 289749
Number of successful extensions: 954
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)