Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0812
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.52 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.91 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 611 KGTRTEALNLRPSRKGRIT 555
           +  R  ALN++P+ KGRIT
Sbjct: 445 QAVRMSALNVQPTSKGRIT 463


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 262 VEDDESADPRLAKDPAYEMFD--KVDKFLQSHTLRV 363
           +++DES  P+L   P +EM D  K+D  +    +RV
Sbjct: 82  LKNDESESPKLNPYPNWEMNDINKIDSIINIIRVRV 117


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 651 YSWSHFPW 674
           Y WSHFP+
Sbjct: 113 YIWSHFPY 120


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 305 RPTKCSTKWTSFSR 346
           +PTK  ++W S+SR
Sbjct: 537 KPTKEDSEWPSYSR 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,672
Number of Sequences: 438
Number of extensions: 3367
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)