Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0812
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family...    31   0.97 
At5g14240.1 68418.m01664 expressed protein                             28   6.8  
At4g28560.1 68417.m04085 leucine-rich repeat family protein (fra...    27   9.0  
At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxida...    27   9.0  

>At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 503

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 94  SATYPASKLVKNIYNECLSQYSVECVKPRTLQWISSVANDDEIKITEDLSIV 249
           SAT   ++ V+ +   CL Q   E  +PRTLQ IS  AN  + +I + + I+
Sbjct: 163 SATCLRNRSVEALATACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKIL 214


>At5g14240.1 68418.m01664 expressed protein
          Length = 256

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 52  MARIIVLLSIVAFASATYPASKLVKNIYNECLSQYSVECVKPRTL 186
           +A   +LL  +    + YPA+K VK I  +C+  Y  +C  P  L
Sbjct: 132 VAECSLLLGCLDELGSRYPATKFVKIISTDCIPNYP-DCNLPTLL 175


>At4g28560.1 68417.m04085 leucine-rich repeat family protein
           (fragment) contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611;
          Length = 450

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 241 SIVKTGTVEDDESADPRLAKDPAYE--MFDKVDKFLQSHTLRVKVPEEITKS 390
           +++ +   +DDE+A P+LA DP+ +  ++  +D    + + R   P++I  S
Sbjct: 18  TLITSQQSDDDENASPQLALDPSEQEAVYRVLDSVNSAISWRTIFPDDICAS 69


>At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxidase
           / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1)
           Identical to 1-aminocyclopropane-1-carboxylate oxidase
           (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073,
           gb|T5714, gb|R90435, gb|R44023, gb|AA597926,
           gb|AI099676, gb|AA650810 and gb|29725 come from this
           gene
          Length = 323

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 115 KLVKNIYNECLSQYSVECVKPRTLQWISSVANDDEIKITEDLSIVKTGTVEDDESAD 285
           K+ K  Y +C+ +   E +K R L  + S  ND + + T  L  +    + D    D
Sbjct: 51  KMTKEHYKKCMEERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLD 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,145
Number of Sequences: 28952
Number of extensions: 276038
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)