Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0808
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.47 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.47 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.3  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   7.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   7.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 142 YYYNLRFSLPSNHVSHFNYI 201
           YYYN       N+++H NY+
Sbjct: 359 YYYNKNHPNSENYINHQNYV 378


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 142 YYYNLRFSLPSNHVSHFNYI 201
           YYYN       N+++H NY+
Sbjct: 307 YYYNKNHPNSENYINHQNYV 326


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 381 QMKNLTNI*LKRRSVSQAQRTRAFHYN 301
           +++N T++ +KR +  + +  R+FH N
Sbjct: 875 RLENHTSVKIKREAEDRDEDERSFHSN 901


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 112 IQFLFYISHFYYY 150
           + F F+IS F+Y+
Sbjct: 237 VSFYFFISTFFYF 249


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 112 IQFLFYISHFYYY 150
           + F F+IS F+Y+
Sbjct: 233 VSFYFFISTFFYF 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,024
Number of Sequences: 336
Number of extensions: 2293
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)