Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0808
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    32   0.071
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   1.5  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   3.5  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 31.9 bits (69), Expect = 0.071
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 82  YKRIL*NDG--FIQFLFYISHFYYYNLRFSL-PSNHVSHFNYIDFIFFVSD 225
           YKR+L N+   F + + Y+ HF    L  +  PSN V++ NY + + F+ D
Sbjct: 494 YKRLLYNEWERFAKLVAYLDHFGDEILSINFDPSNAVTYINYANKVAFIRD 544


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 121 LFYISHFYYYNLRFSLPSNHVSHFNYIDFIFF 216
           L Y++  Y    + SLP +H  ++  I ++FF
Sbjct: 75  LIYLADKYDTERKISLPRDHPEYYKVIQYLFF 106


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 122 KNCINPSFYKIRLYKVPKTIIIYTECKKMTVYKNYSF 12
           +N  N SF+K+  +KVP  +    E + + V+K Y++
Sbjct: 180 RNIENESFFKVPFFKVPDLV----ERRAVFVHKGYAY 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,038
Number of Sequences: 5004
Number of extensions: 36690
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)