Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0806
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    24   1.1  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    24   1.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.0  

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 251 DVAQGIVNAARDDDTKCEVYQAVGPK---RYLLADLVDWFYKLMRKDEKWGGY 400
           ++   + +A +   +KC   Q  G +   RYL+ +  DW+ +L  K +  G Y
Sbjct: 60  ELKNNLADALQTSCSKCSQRQKDGSRTIIRYLIKNKRDWWNELEAKYDPTGIY 112


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 251 DVAQGIVNAARDDDTKCEVYQAVGPK---RYLLADLVDWFYKLMRKDEKWGGY 400
           ++   + +A +   +KC   Q  G +   RYL+ +  DW+ +L  K +  G Y
Sbjct: 60  ELKNNLADALQTSCSKCSQRQQDGSRTIIRYLIKNKRDWWNELEAKYDPTGIY 112


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +2

Query: 362 YKLMRKDEKWGGYIRYDMKYDPILPLKVALVNAISPAYPLGNLHWEGIEREATSDN-VVI 538
           Y L    ++ GG  R  + Y   L +   +     P  P+      G     T D+    
Sbjct: 147 YHLQDIIDRNGG--RAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHTPLTDDHDEKY 204

Query: 539 GVPTLEDLG 565
           GVPTLE+LG
Sbjct: 205 GVPTLEELG 213


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 502 N*KGSYFR*CGDRRAHP*GLGRHLDTH 582
           N K +  R CG   A P  L  HL TH
Sbjct: 246 NQKPNVCRICGKSYARPSTLKTHLRTH 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,638
Number of Sequences: 336
Number of extensions: 4454
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)