Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0806
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.71 
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    29   0.71 
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    29   0.94 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   6.6  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = -1

Query: 558 SSRVGTPITTLSEVASLSIPSQ*RFPSG*AGEMALTKATF--RGSIGSYFMS*RMYPPHF 385
           S+    P ++ S  AS S+ S    PS  +  ++ + AT     S  S   S     P  
Sbjct: 17  SASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPAS 76

Query: 384 SSFLISL*NQSTKSASK*RFGPTAW*TSHLVSSSRAAFT 268
           SSF+ SL + S++ +S      T+  ++ L SSS A+ T
Sbjct: 77  SSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPT 115


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 104 LGIPL*LHTLPNTCLFSKQMVSSGQEVSDVLQH 6
           LG+P      PN C+FS   V  G   +D+L H
Sbjct: 411 LGLPSNFKCFPNPCMFSINDVVFGVSTNDILLH 443


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 593 VPWELKPFRAHQYYMGSAWESSPKPXPFHQFTQLGIVFXNNSY 721
           + W + P R HQ Y     E +P P     F QL + +  N +
Sbjct: 65  IDWTVSPIRVHQIYENCELEKNPNP-----FVQLALFYVINYF 102


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 17  HPKPLVLKKPSAWKISKYLGECAVREEY 100
           H  P  L +PSA ++ KYL E A +  Y
Sbjct: 4   HDPPAPLSQPSASRLQKYLLESAEKHAY 31


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 203  LYKNGLATVKQPVFVSDVAQGI 268
            L K GL++ K P+FVS + +G+
Sbjct: 1016 LGKLGLSSSKSPIFVSSILEGL 1037


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,069
Number of Sequences: 5004
Number of extensions: 77650
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)