Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0806
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 72 6e-13
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 40 0.002
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 40 0.002
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 40 0.002
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 29 3.0
03_01_0343 - 2699518-2700114 29 3.9
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601... 29 5.2
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 29 5.2
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602... 28 9.1
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 28 9.1
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 71.7 bits (168), Expect = 6e-13
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Frame = +2
Query: 44 PSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLA 223
PS +K GE +V +E+P ATI+R + + G+EDR L + + +PL +G +
Sbjct: 103 PSRMLRAKAAGEESVLKEFPEATIMRPATMIGTEDRILNRWA-QFAKNWGFLPLVDSG-S 160
Query: 224 TVKQPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGY 400
T QPV+V DVA IVN+ +DD T + Y+ GP+ Y + +L + Y+ +R +W Y
Sbjct: 161 TKIQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPEIYTVHELAELMYETIR---EWPRY 217
Query: 401 I 403
I
Sbjct: 218 I 218
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 233 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 403
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 233 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 403
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 233 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 403
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 167 VNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVG 322
+NK + H+ + PLYK ++ P+F+S + + V TK +Y+A G
Sbjct: 876 LNK-KFHARIKPLYKQRFFSILMPIFLSKIKESTVMT-----TKLVLYRAFG 921
>03_01_0343 - 2699518-2700114
Length = 198
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -2
Query: 323 AQRLGRLHI*CRRRARHSRYPERRPTQTQAVS 228
AQ LG H+ RR RH P RRPT T S
Sbjct: 40 AQALGG-HMNIHRRHRHRAMPSRRPTATGTTS 70
>08_01_0684 +
6009474-6009582,6009715-6009904,6011412-6011483,
6011644-6011715,6011806-6011877,6012163-6012234,
6012283-6012354,6012479-6012550,6012634-6012705,
6013112-6013183,6013275-6013349,6013453-6013524,
6013619-6013684,6013752-6013777,6014179-6014558,
6014642-6014840,6014910-6015068,6015569-6015613,
6015742-6015973,6016053-6016203,6016306-6016665
Length = 879
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 551 LEDLGVTLTHMEDQVPWELKPF-RAHQYYMGSAWESSPKPXPFHQFTQLGIVFXNNSYLL 727
L+ LG++LT+ Q+P EL + Q Y SA S P P + L ++ +++
Sbjct: 193 LKYLGISLTNFSGQLPEELGNLTKLRQLYTDSAGLSGPFPSTLSRLKNLKLLRASDNNFT 252
Query: 728 G 730
G
Sbjct: 253 G 253
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 653 SPKPIPCSTDGREKVSVPMAPGLPCVSR*RPSPQGWARRSPHYL 522
SP P P R ++ P+AP P RP P W+ SP L
Sbjct: 15 SPSPSPAVAATRRRLRFPLAPPRP-----RPPPLRWSPPSPFRL 53
>08_01_0685 +
6025975-6026074,6026168-6026357,6026963-6027034,
6027187-6027258,6027354-6027425,6027784-6027855,
6027980-6028051,6028134-6028205,6028483-6028554,
6028791-6028865,6028970-6029041,6029134-6029199,
6029267-6029332,6029409-6029453,6029542-6029606,
6029697-6030076,6030455-6030653,6030725-6030883,
6030966-6031084,6031156-6031200,6031226-6031791,
6031871-6032021,6032117-6032454,6033702-6033765,
6034329-6034370,6035572-6035575,6035853-6036039,
6037252-6037323,6037687-6037758,6037867-6037938,
6038019-6038090,6038651-6038725,6038815-6038886,
6038988-6039053,6039163-6039228,6039348-6039392,
6039469-6039533,6039615-6039994,6040070-6040202,
6040354-6040512,6040599-6040717,6040805-6041015,
6041155-6041386,6041469-6041619,6041725-6042084
Length = 1952
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 560 LGVTLTHMEDQVPWELKPF-RAHQYYMGSAWESSPKPXPFHQFTQLGIVFXNNSYLLG 730
LG++LT+ Q+P EL + + Y SA S P P F + L ++ +++ G
Sbjct: 169 LGISLTNFTGQLPEELGNLTKLQRLYTDSAGLSGPFPSTFSKLKNLKLLRASDNDFTG 226
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = -1
Query: 615 KGFSSHGTWSSMCVKVTPKSSRVGTPITTLSEVASLSIPSQ*RFPSG*AGEMALTKATFR 436
K SSHG K S++ + +TTL+ A+ +PS R P G ++K FR
Sbjct: 19 KKMSSHG----FSTKGGDAGSKLPSTVTTLNPNAAEFVPSTFRSPFGSRTVADVSKPDFR 74
Query: 435 GSIG 424
G G
Sbjct: 75 GLSG 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,770,857
Number of Sequences: 37544
Number of extensions: 527898
Number of successful extensions: 1197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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