Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0806
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 2e-20
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_20141| Best HMM Match : BTK (HMM E-Value=6.2) 31 1.00
SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1) 29 3.0
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29) 29 3.0
SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26) 29 3.0
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 29 4.0
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037) 28 7.0
SB_32842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_30217| Best HMM Match : Flavi_glycop_C (HMM E-Value=8.2) 28 9.3
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) 28 9.3
SB_27114| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 96.7 bits (230), Expect = 2e-20
Identities = 46/111 (41%), Positives = 73/111 (65%)
Frame = +2
Query: 44 PSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLA 223
PS + +K LGE AVREE+P ATI+R ++G ED+FL +RS +PL + G+
Sbjct: 144 PSKFLHTKALGEQAVREEFPNATILRPGTVFGHEDKFLNYYAY-LRSLPLGIPLIEGGMN 202
Query: 224 TVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMR 376
T K PV+V+DVAQ I+ A +++ + + ++ VGP Y L D++D+ Y++M+
Sbjct: 203 TKKMPVYVADVAQSILEAIKEEASVGQTFELVGPSEYYLYDIIDYIYRVMK 253
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 596 PWELKPFRAHQYYMGSAWESSPKPXPFHQFTQL 694
PW + PFRAH +GS W PF +QL
Sbjct: 730 PWPVPPFRAHYPVVGSGWCLPRHDRPFDVRSQL 762
>SB_20141| Best HMM Match : BTK (HMM E-Value=6.2)
Length = 254
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 40 ETICLENKQVFGRVCSQRGIPNCHYY 117
E CL NK++F + S+RG+P C Y
Sbjct: 96 ERDCLSNKRLFSCMRSRRGLPGCQSY 121
>SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 34 PEETICLENKQVFGRVCSQRGIPNCH 111
P E++C + Q+F VC+ GIP H
Sbjct: 131 PTESLCQKQLQIFIEVCNYLGIPIAH 156
>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
Length = 256
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 449 KQLSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVL 324
K + G V+ R R+ CI P+F + L+ K + Q+S++L
Sbjct: 168 KSVFGKVAHRKGIRAACICPVFTDTPLLDKIKEEMPQMSTLL 209
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 554 EDLGVTLTHMEDQVPWELKPFRAHQYYMGSAWESSPKPXPFHQFTQLGIV 703
E +G+ L H D+ L+PF + S W++ P++ LGI+
Sbjct: 1573 ETIGLHLNH--DRTKQGLEPFLGSTHKKDSTWQTQDGSPPYNSINLLGII 1620
>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
Length = 637
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +1
Query: 529 CGDRRAHP*GLGRHLDTHGRPGAMGTETFSRPSVLHGIGLGEFPETXTLPPVYSAW 696
C HP L +H+ H +P G + S FP T PP+ S W
Sbjct: 552 CNKSYTHPSSLRKHMKLHSKPSDSGVGSPSDDGGSSAKTSPNFPSASTYPPM-SEW 606
>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
Length = 520
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 586 RPGAMGTETFSRPSVLHGIGLGEFPETXTLPP 681
R GA G +S P+ G G FP+T LPP
Sbjct: 6 RCGAKGVLIYSDPADYVAAGAGTFPDTWWLPP 37
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/85 (23%), Positives = 35/85 (41%)
Frame = -2
Query: 377 SSLVCKTNQPNRQVSSVLAQRLGRLHI*CRRRARHSRYPERRPTQTQAVSQSLVRFYRGA 198
+S V +++ ++ + QR R C + A+ RY R P + A S+ Y G
Sbjct: 97 ASAVLRSSLKTIDITRIRRQRSMRS---CAKLAKDDRYSTRTPAEEHAQGGSIFDAYAGR 153
Query: 197 SGCCEIASY*LMTSKICLRNHRCLM 123
C + S T +R R ++
Sbjct: 154 GACAVVRSSLKTTDIRRVRRQRSML 178
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 293 CRRRARHSRYPERRPTQTQAVSQSLVRFYRGASGCCEIAS 174
C + A+ RY R P + A +S+ Y G C + S
Sbjct: 16 CAKLAKDDRYSTRTPAEEHAQLRSVFDAYAGRGACAVVQS 55
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 293 CRRRARHSRYPERRPTQTQAVSQSLVRFYRGASGCCEI 180
C + A+ RY R P + A +S+ Y G C +
Sbjct: 765 CAKLAKDDRYSTRTPAEEHAQLRSIFDVYAGRGACAVV 802
>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
Length = 1235
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 446 QLSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVLAQRLGRLHI 297
QL+ + + R HP F SL+C T++ +Q S LA + +LH+
Sbjct: 1178 QLNSCPWQQATPRGHVTHPSF---SLMCSTHKSFQQYSGFLASVVSKLHL 1224
>SB_32842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = -2
Query: 368 VCKTNQPNRQVSSVLAQRLGRLHI*CRRRARHSRYPERRPTQTQAVSQSLVRFYRGASGC 189
VC + + ++ + RL R C + + RY R P + +S+ Y G C
Sbjct: 35 VCAVVRSSLKMIDIRRVRLQRSMRSCAKLTKDDRYSTRTPEEEHTQLRSIFDAYAGRGAC 94
Query: 188 CEIAS 174
+ S
Sbjct: 95 AVVRS 99
>SB_30217| Best HMM Match : Flavi_glycop_C (HMM E-Value=8.2)
Length = 132
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 276 PRATTTLNVKSTKPLGQNA-TYLPIWL 353
P T TL T PL +A +YLP+WL
Sbjct: 17 PSGTMTLECHYTTPLPSHAASYLPVWL 43
>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
Length = 527
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 8 AEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATI 115
+EEHP PL + P + SK L +++ + T TI
Sbjct: 47 SEEHPPPLPKRGPKLKQRSKTLDHIEIQQGFKTFTI 82
>SB_27114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 8 AEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATI 115
+EEHP PL + P + SK L +++ + T TI
Sbjct: 53 SEEHPPPLPKRGPKLKQRSKTLDHIEIQQGFKTFTI 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,073,480
Number of Sequences: 59808
Number of extensions: 589048
Number of successful extensions: 1509
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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