Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0806
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   101   4e-22
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    32   0.38 
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    29   4.7  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  101 bits (243), Expect = 4e-22
 Identities = 74/200 (37%), Positives = 99/200 (49%), Gaps = 5/200 (2%)
 Frame = +2

Query: 2   LNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMR 181
           L A   P+       S +  SK LGE AVREE+P ATIIR S IYG  D F++  V++ R
Sbjct: 176 LGATTQPQKGHFVAKSQFLHSKGLGEVAVREEFPEATIIRPSVIYGELDGFIQYYVSRWR 235

Query: 182 SHS-NLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVGPKRYLLADLVDW 358
               + + LYK G  T K P++V DVA GI +A  D   K   Y+ VGP  Y L++L+D+
Sbjct: 236 KTPLDYVYLYKKGEETYKMPIWVGDVAAGIQSAVNDPTAKGHTYEFVGPHCYQLSELIDF 295

Query: 359 FYKLMRKDEKWG-GYIRYDM--KYDPILPLKVALVNAISPAYPLGNLHWEGIEREATSDN 529
            YK       +G  Y R+ M   Y   L +   L   +       N  W  +E      +
Sbjct: 296 MYKKAHCLSDFGFRYKRHGMPDPYFMALTMATELYGKVFKCKVPLNREW--MEFVEVQSD 353

Query: 530 VVIGVPTLEDLGV-TLTHME 586
           ++ G  TL DLGV  LT  E
Sbjct: 354 ILTGERTLADLGVRRLTEFE 373


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +2

Query: 392 GGYIRYDMKYDP----ILPLKVALVNAISPAYP-LGNLHWEGIEREATSDNVVIGVPTLE 556
           G YI  D   DP    I  LK+ L+N  +  +     +H E +++E  S+     + TLE
Sbjct: 68  GTYITLDQILDPDSLMIWYLKIELLNTTTADFDYFFKMHSEYVKKENKSEKFSFVMETLE 127

Query: 557 DLGVTLTHM 583
           ++ VTLT++
Sbjct: 128 NVNVTLTNI 136


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 443  LSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVLAQRLGRLHI*C 291
            L G  S    CR+    P     + +C TN P R  +  + ++LGR    C
Sbjct: 1763 LPGVKSTTCLCRTGFAGPQCEEITDICSTNNPCRNGARCIGEKLGRFKCQC 1813


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,982,403
Number of Sequences: 27780
Number of extensions: 433879
Number of successful extensions: 1025
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)