Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0806
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.57 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.76 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.3  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 449 LVNAISPAYPLGNLHWEG--IEREATSDNVVIGVPTLEDLGVTLTHMEDQVP 598
           L+    P   +  L W    I REATSD V +G+ T+  L          +P
Sbjct: 248 LIQVYVPCVLIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLP 299



 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 594 TWSSMCVKVTPKSSRVGTPITTLSEVASLSIPSQ*RFP 481
           +W S  +     S RVG  ITT+  ++++S+ S+   P
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLP 299


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 449 LVNAISPAYPLGNLHWEG--IEREATSDNVVIGVPTL 553
           L+    P   L  L W    + REAT+D V +G+ T+
Sbjct: 217 LIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTV 253


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 482 GNLHWEGIEREATSD 526
           G + WEG+E+E   D
Sbjct: 100 GGIFWEGLEKEVGDD 114


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 246 CRTSLRVS*MPRATTTLNVKSTKPLGQNATYLPI 347
           C T+ +   +   TTT+N  +T  +  + T +PI
Sbjct: 823 CVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPI 856


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 539 GVPTLEDLG 565
           GVPTLE+LG
Sbjct: 209 GVPTLEELG 217


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 323  PKRYLLADLVDWFYKLMRKDEKW--GGYIRYDMKYD 424
            P  YLL D +   Y   RK+  W  G ++  ++ Y+
Sbjct: 977  PTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELIYE 1012


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,926
Number of Sequences: 438
Number of extensions: 5362
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)