Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0806
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20360.1 68415.m02377 expressed protein                             59   4e-09
At3g23660.1 68416.m02975 transport protein, putative similar to ...    29   2.5  
At1g32220.1 68414.m03963 expressed protein                             29   2.5  
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s...    29   4.4  
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t...    28   5.8  
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu...    28   7.6  

>At2g20360.1 68415.m02377 expressed protein
          Length = 402

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
 Frame = +2

Query: 35  LKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKN 214
           +  PS    +K   E AV    P ATI+R + + G+EDR L      ++ +   +PL   
Sbjct: 190 VSSPSRMLRAKAAAEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKY-GFLPLIGG 248

Query: 215 GLATVKQPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKW 391
           G  T  QPV+V DVA  IV A +DD +   + Y+  GP  +   +L +  Y ++R   +W
Sbjct: 249 G-TTKFQPVYVVDVAAAIVAALKDDGSSMGKTYELGGPDVFTTHELAEIMYDMIR---EW 304

Query: 392 GGYIR 406
             Y++
Sbjct: 305 PRYVK 309


>At3g23660.1 68416.m02975 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 765

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 86  VREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVA 259
           VRE +P   ++   D +GS+ RFL + +N   +++N      N ++T    +F  DV+
Sbjct: 699 VRERFPVPRLV-VCDQHGSQARFLLAKLNPSATYNN-----ANEMSTGSDVIFTDDVS 750


>At1g32220.1 68414.m03963 expressed protein
          Length = 296

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +2

Query: 131 IYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDD 292
           IY S +RF+R L +   S   L P           PV V D+A  ++NA +DDD
Sbjct: 235 IYDSAERFIRPLRSLPASDLILAP-----------PVNVDDLALAVINAVKDDD 277


>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
           similar to GI:5579331 from [Homo sapiens]; contains Pfam
           profile PF01532: Glycosyl hydrolase family 47
          Length = 624

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 380 DEKWGGYIRYDMKYDPILPL 439
           D  W GY +Y M YD ++P+
Sbjct: 137 DHAWSGYRKYAMGYDELMPI 156


>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
           PBK1 protein (GI:3668141) [Homo sapiens]; weak
           similarity to 60S ribosomal protein L10a.
           (Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
          Length = 372

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 47  SAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKN--GL 220
           SA K++K   E     E  TAT+    D+  S  +++RSL  K+ S S  +PLY+    L
Sbjct: 187 SAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKL-SESLSLPLYQTVPYL 245

Query: 221 ATVKQPVFVSDVAQGIVNAARDDD 292
                P+ V +V  G   A  D D
Sbjct: 246 QLKIDPLGVEEVKNGEGLAKSDVD 269


>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           N-terminal partial sequence of endo-xyloglucan
           transferase GI:2244732 from [Gossypium hirsutum]
          Length = 293

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 684 NWWKGXGFGELSQADPM*Y*WAR 616
           NWW+G  + +LS  +   Y W R
Sbjct: 245 NWWEGSAYHQLSPVEARSYRWVR 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,254,338
Number of Sequences: 28952
Number of extensions: 417203
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)