Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0805
(570 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 136 1e-32
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 33 0.16
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 31 0.88
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7) 29 2.0
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 29 2.0
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005) 28 6.2
SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5) 28 6.2
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 136 bits (329), Expect = 1e-32
Identities = 57/100 (57%), Positives = 77/100 (77%)
Frame = +1
Query: 40 GPAXVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY 219
GP LKRNF+HL +++ V ++V+ WF S+KELA V+T+ +H+ENMIKGV G++Y
Sbjct: 585 GPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKELACVKTIITHIENMIKGVIYGYRY 644
Query: 220 KMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 339
KMRAVYAHFPIN E +++E+RNFLGEKY+RRV+M P
Sbjct: 645 KMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 6 VHVKSRLVTVKGPRGSSQK 62
V VKSR+VTV GPRG+ ++
Sbjct: 574 VKVKSRVVTVTGPRGTLKR 592
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 424 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 513
ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 271 GNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 444
G ++ +++ LG++ + T + K+EL +SLE+VS A +Q S
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255
Query: 445 TVKNKDIRKFLDGLYVSEK 501
K+++I L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 30.7 bits (66), Expect = 0.88
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 310 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 486
K R ++A G+ ++P Q + LI G EDV S+ +L + + + KF DG
Sbjct: 25 KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83
Query: 487 YVSEKTTV 510
+V ++ T+
Sbjct: 84 FVKKRNTI 91
>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
Length = 535
Score = 29.5 bits (63), Expect = 2.0
Identities = 30/134 (22%), Positives = 52/134 (38%)
Frame = +1
Query: 103 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 282
P K W K A+ +E I TK Q K +Y N E ++
Sbjct: 215 PGFRKKSSWCPEKGREIAIEAYAKALEEKILSSTK--QGK---IYR----NLTQDERRAL 265
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 462
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 266 KDLR-YAKDIVIKEADKGSGVVVMDKDKYNQEALRQLSDKEVYKETKDLTQYITELVNRR 324
Query: 463 IRKFLDGLYVSEKT 504
+RK ++ +KT
Sbjct: 325 VRKLSSDGFIDDKT 338
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 395 LPSMINSSFCLGELTTVTPGAIFTLLMYFSPKKLRISIIE 276
+P I S LG+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 29.1 bits (62), Expect = 2.7
Identities = 30/134 (22%), Positives = 54/134 (40%)
Frame = +1
Query: 103 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 282
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 444 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 494
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 462
++R + + I+ GV V++ K E++ + + E + L Q T + N+
Sbjct: 495 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEVLRQLSDKEVYKETKDLTQYITELVNRR 553
Query: 463 IRKFLDGLYVSEKT 504
+RK ++ +KT
Sbjct: 554 VRKLSADGFIDDKT 567
Score = 27.9 bits (59), Expect = 6.2
Identities = 28/134 (20%), Positives = 50/134 (37%)
Frame = +1
Query: 103 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 282
P K W K A+ +E I TK +Y N E ++
Sbjct: 205 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK-----QGTIYG----NLTQDERRAL 255
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 462
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 256 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 314
Query: 463 IRKFLDGLYVSEKT 504
+RK ++ +KT
Sbjct: 315 VRKLSADGFIDDKT 328
>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 29.1 bits (62), Expect = 2.7
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +1
Query: 103 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 282
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 123 PAFRKKSSWCPEKSREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERQAL 173
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 462
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 174 KDLR-YTKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 232
Query: 463 IRKFLDGLYVSEKT 504
+RK ++ +KT
Sbjct: 233 VRKLSADGFIDDKT 246
>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.3 bits (60), Expect = 4.7
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +1
Query: 103 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 282
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 57 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 107
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 462
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 108 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 166
Query: 463 IRKFLDGLYVSEKT 504
+RK ++ +KT
Sbjct: 167 VRKLSADGFIDDKT 180
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 425 AAELETSSKELPSMINSSFCLGELTTVTPGAIFTLLMYFSPKKLRISIIEL 273
AAE++TS L + + S CL VT IFT MY P+++ ++ L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284
>SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005)
Length = 316
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 373 DELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKT-TVVLDD 522
D ++EG+ + V S AA++++ V N +DG V+ +++LDD
Sbjct: 169 DAAVVEGDKVVVVDSDAAVVERDKVVVNDSDAAVVDGDEVAVVAWSLILDD 219
>SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)
Length = 422
Score = 27.9 bits (59), Expect = 6.2
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +1
Query: 103 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 282
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 107 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 157
Query: 283 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 462
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 158 KDLR-YAKDIVIKEADKGSGVVVMDKGKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 216
Query: 463 IRKFLDGLYVSEKT 504
+RK ++ +KT
Sbjct: 217 VRKLSADGFIDDKT 230
>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 476 KNFLISLFLTVVDCWMRAAELETSSKELPSMINSSFCLGELTTV 345
K+F+ + +VDCW+ + E S+ LPS S +TTV
Sbjct: 298 KDFIGRIVPLLVDCWIESNPAEMST-SLPSSSISPVAFSTMTTV 340
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.5 bits (58), Expect = 8.2
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +1
Query: 139 KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE-IRNFLG 306
K+ LAA + V + N+ KGVT+G K R V PI V T+G + + + G
Sbjct: 948 KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007
Query: 307 EKYIRRVKMAPGVTVVNS-PKQKDELIIEG 393
+ + + PG V P + ++ +G
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,265
Number of Sequences: 59808
Number of extensions: 337695
Number of successful extensions: 818
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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