Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0805
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   214   3e-56
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.58 
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    31   0.77 
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   4.1  
U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   5.4  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  214 bits (523), Expect = 3e-56
 Identities = 96/161 (59%), Positives = 124/161 (77%)
 Frame = +1

Query: 40  GPAXVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY 219
           GP   ++++F+HL +++  +    L+V KWFG +KELAA+RTVCSH++NMIKGVT GF+Y
Sbjct: 29  GPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRY 88

Query: 220 KMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNS 399
           KMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QKDE+++EGN 
Sbjct: 89  KMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGND 148

Query: 400 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 522
           ++ VS +AA IQQST VK KDIRKFLDG+YVSEKTT+V  D
Sbjct: 149 VQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 206 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 69
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +1

Query: 73  HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 237
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 238 AHF 246
            +F
Sbjct: 421 LNF 423


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 513 HNSCFLRYIKTIQELSDILILDCSRLLDESSRARDIFQ 400
           +N+C LR IK +  L+ +L  + SRL +  SR RD+F+
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFK 60


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 522 VI*HNSCFLRYIKTIQELSDILILDCSRLLDESSRARD 409
           ++ HN  +L + KT   L DIL+ +CS+   E +   D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217


>U97593-2|AAY86241.1|  195|Caenorhabditis elegans Hypothetical
           protein C46G7.5 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -2

Query: 236 YTARILYWKPLVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLL 57
           +T +  Y K ++ P +  S  E  ++T +  FL     +  + R  T+ MST+  L+ L+
Sbjct: 42  FTLQTYYSKKIILPKMDISRYELNLVTVSLFFLYFQSRNPAKARPQTLWMSTSPRLRELM 101

Query: 56  RTXAGPFNCHQ 24
              +   NC +
Sbjct: 102 SIRSRRTNCSE 112


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +1

Query: 199  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 336
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,274,838
Number of Sequences: 27780
Number of extensions: 246340
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)