Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0805
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   190   7e-49
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   189   1e-48
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   189   1e-48
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    28   5.0  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    27   6.7  
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   8.8  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   8.8  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  190 bits (462), Expect = 7e-49
 Identities = 91/169 (53%), Positives = 120/169 (71%), Gaps = 5/169 (2%)
 Frame = +1

Query: 31  QLKGPAXVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIK 195
           +++GP   L R+FKHL +D +++       R LK++ WFGS+K  A++RT  SHV+N+I 
Sbjct: 26  EVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIA 85

Query: 196 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 375
           GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K KD
Sbjct: 86  GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145

Query: 376 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 522
           E+I+EGN +E VS S ALI Q   VK KDIRKFLDG+YVSEK  + +++
Sbjct: 146 EIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  189 bits (460), Expect = 1e-48
 Identities = 89/169 (52%), Positives = 122/169 (72%), Gaps = 5/169 (2%)
 Frame = +1

Query: 31  QLKGPAXVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIK 195
           +++GP   L R+FKHL +D +++       + LK++ WFG++K  A++RT  SHV+N+I 
Sbjct: 26  EVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLIS 85

Query: 196 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 375
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 376 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 522
           E++++GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  189 bits (460), Expect = 1e-48
 Identities = 89/169 (52%), Positives = 122/169 (72%), Gaps = 5/169 (2%)
 Frame = +1

Query: 31  QLKGPAXVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIK 195
           +++GP   L R+FKHL +D +++       + LK++ WFG++K  A++RT  SHV+N+I 
Sbjct: 26  EVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLIS 85

Query: 196 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 375
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 376 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 522
           E++++GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 247 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 426
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 427 LIQQSTTVKNK 459
            +QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +1

Query: 304 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 471
           G+K    +++A     + SP+ K +L+ I+G + EDVS S     L  + T  + KD+  
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695

Query: 472 FLDG 483
            +DG
Sbjct: 696 VIDG 699


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 309 LPQEVTYLN--N*ITLSGDTVNGEVSIHSTHLVLEAFSYSFNHV 184
           +P+EV  L   N + LS +  +GE+ +   +L L   + S+NH+
Sbjct: 539 IPKEVGILPVLNYLDLSSNQFSGEIPLELQNLKLNVLNLSYNHL 582


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 156 GGKLLFGSEPFLN-LQETRVYHANVNSQVFKVP 61
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,996
Number of Sequences: 28952
Number of extensions: 228728
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)