Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0804
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 365 e-101
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 364 e-101
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 307 7e-84
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 268 4e-72
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 181 6e-46
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 1e-26
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 103 1e-22
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 6e-04
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.90
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 29 2.7
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 2.7
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 3.6
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 3.6
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 3.6
SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4) 29 4.8
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 28 8.4
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.4
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05) 28 8.4
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2) 28 8.4
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 365 bits (897), Expect = e-101
Identities = 172/205 (83%), Positives = 187/205 (91%)
Frame = +1
Query: 7 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 186
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 187 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 366
MNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+S
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 367 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 546
SMVLTKMKETAEAYLG V +AV+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAA
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 547 IAYGLDKKGTGERNVLIFDLGGGTF 621
IAYGLDKK ERNVLI+DLGGGTF
Sbjct: 181 IAYGLDKKVGVERNVLIYDLGGGTF 205
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +2
Query: 620 FDVSILTIEDGIFEVKSTGRRHPLG 694
FDVS+LTIEDGIFEVKST LG
Sbjct: 205 FDVSVLTIEDGIFEVKSTAGDTHLG 229
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 364 bits (896), Expect = e-101
Identities = 170/205 (82%), Positives = 190/205 (92%)
Frame = +1
Query: 7 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 186
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 187 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 366
+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+S
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEIS 120
Query: 367 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 546
SMVL KMKETAEAYLG+ V +AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA
Sbjct: 121 SMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAA 180
Query: 547 IAYGLDKKGTGERNVLIFDLGGGTF 621
+AYGLDK +GE+NVLIFDLGGGTF
Sbjct: 181 LAYGLDKSLSGEKNVLIFDLGGGTF 205
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/26 (69%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +2
Query: 620 FDVSILTIEDG-IFEVKSTGRRHPLG 694
FDVSILTI+DG +FEVKST LG
Sbjct: 205 FDVSILTIDDGSLFEVKSTAGDTHLG 230
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 307 bits (753), Expect = 7e-84
Identities = 146/200 (73%), Positives = 172/200 (86%), Gaps = 1/200 (0%)
Frame = +1
Query: 25 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNN 201
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 202 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 381
T+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+MVLT
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLT 823
Query: 382 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 561
KMKETAEAYLGK V +AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+
Sbjct: 824 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGM 883
Query: 562 DKKGTGERNVLIFDLGGGTF 621
DKK GE+N+L+FDLGGGTF
Sbjct: 884 DKK-EGEKNILVFDLGGGTF 902
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 620 FDVSILTIEDGIFEVKSTGRRHPLG 694
FDVS+LTI++G+FEV +T LG
Sbjct: 902 FDVSLLTIDNGVFEVVATNGDTHLG 926
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 268 bits (656), Expect = 4e-72
Identities = 136/187 (72%), Positives = 147/187 (78%), Gaps = 25/187 (13%)
Frame = +1
Query: 7 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 186
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 187 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV- 363
MNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 364 ------------------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQR 471
SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQR
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQR 180
Query: 472 QATKDAG 492
QATKDAG
Sbjct: 181 QATKDAG 187
Score = 154 bits (373), Expect = 8e-38
Identities = 76/88 (86%), Positives = 80/88 (90%)
Frame = +1
Query: 358 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPT 537
++SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 538 AAAIAYGLDKKGTGERNVLIFDLGGGTF 621
AAAIAYGLDKK ERNVLIFDLGGGTF
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTF 298
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +2
Query: 620 FDVSILTIEDGIFEVKST 673
FDVS+L+IEDGIFEVKST
Sbjct: 298 FDVSVLSIEDGIFEVKST 315
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 181 bits (440), Expect = 6e-46
Identities = 95/205 (46%), Positives = 129/205 (62%), Gaps = 3/205 (1%)
Frame = +1
Query: 13 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 186
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 187 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEV 363
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 364 SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAA 543
V+ K++ AE L TV AV++VPA F+ QR AT A +++G+ VLR+INEPTAA
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAA 209
Query: 544 AIAYGLDKKGTGERNVLIFDLGGGT 618
A+AYGL KK G NV++ DLGGGT
Sbjct: 210 ALAYGLHKK-EGVANVMVVDLGGGT 233
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 116 bits (280), Expect = 1e-26
Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Frame = +1
Query: 190 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 366
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 367 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 546
+M+ T++K TAE L V + VI+VP+Y+ D QR+ DA +GLN LR++N+ TA +
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVS 237
Query: 547 IAYGLDKKG---TGERNVLIFDLG 609
+AYG+ K+ RNV+ D+G
Sbjct: 238 LAYGIYKQDLPTDKPRNVVFVDIG 261
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 25 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 180
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 103 bits (248), Expect = 1e-22
Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 26/118 (22%)
Frame = +1
Query: 313 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 492
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND+QRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 493 TISGLN------------------------VLRIINEPTAAAIAYGLDKK--GTGERN 588
TI+GL+ VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Frame = +1
Query: 307 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 486
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 487 AGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGT 618
A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G +
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASS 174
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 76 GKVEIIANDQGNRTTPSYVAFTDTERLI 159
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 85 EIIANDQGNRTTPSYVAFT-DTERL 156
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 620 FDVSILTIEDGIFEVKSTGRRHPLG 694
FD+SIL I+ G+FEVK+T LG
Sbjct: 12 FDISILEIQKGVFEVKATNGDTYLG 36
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 93 RQRPGQQDHSVLCCVHRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASR 263
RQ + +++ H R +R+ ++ GG +EP + R T T C+CA R
Sbjct: 267 RQSAPSRSMAIINKTHGKRHGYRKLSRDCGGRRPNEPYERTARVHTILSTDTETCFCAKR 326
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 193 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 95
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 211 RILCCWGSSPPGSWRH 164
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 211 RILCCWGSSPPGSWRH 164
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Frame = +1
Query: 373 VLTKMKETAEAYLGKT----------VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRI 522
V K T+E Y+G T + NA +T+P YF + +K G G+ +
Sbjct: 994 VTRKDNNTSETYVGLTENSFKTRRNKIYNAPLTLPPYFWCHPSRKSKKDGAKEGMAM--A 1051
Query: 523 INEPTAAAIAYGLDKKGTG 579
+++ I+Y LD+K TG
Sbjct: 1052 MSKERNQEISYKLDRKWTG 1070
>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
Length = 735
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 580 ERNVLIFDLGGGTFRRVHPYHRGWYLRGE-IHRP 678
+R VL FD +HP+ RGWY R E H P
Sbjct: 521 KRAVLAFDELIMAAAGLHPFQRGWYRRCERFHHP 554
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 401 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 222
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 221 RLASNIVL 198
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 450 VLQ*LSKTSHKRCRYHLWLERSPNHQ*TDCCCDCLRS*QKGYWRTKCTYL*PRRRYLSTC 629
+++ L H R R R+PNH D +S +G W+++ R+R+ +C
Sbjct: 718 IIKKLLMNLHVRLRRWRRESRAPNHPRPDLNT-LDKSKPEGAWQSRTELTERRKRHFVSC 776
Query: 630 PSLPSRMVSSR 662
+L R ++SR
Sbjct: 777 NTLSRRSLASR 787
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 27.9 bits (59), Expect = 8.4
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Frame = +1
Query: 289 VSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITV------PA 450
++DGG+ KIK + F ++V +K +A GKTV A + V P+
Sbjct: 1157 ITDGGRFKIKTDKENCSYILFIDDVKLDDAGTVKCSATNAAGKTVVRADLEVEEKNVAPS 1216
Query: 451 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK-GTGERNVLIFDLGGG---T 618
+ R K+ S I +P + Y D G +RNV I+ G T
Sbjct: 1217 FHGRQGRLRVKEGREAS--VYFEISGKPKPSVTWYKDDVVIGDEDRNVDIYSRGSSYYFT 1274
Query: 619 FRRVHPYHRGWY 654
++ P +G Y
Sbjct: 1275 IKQARPEDKGTY 1286
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 597 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 511
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
Length = 1264
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 138 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASRHEALA 278
H R +R+ + GG +EP + R T T C+CA R+ + A
Sbjct: 421 HGERHGYRKLSRVCGGRRPNEPYERTARVHTILSTDTETCFCAKRYGSAA 470
>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
Length = 451
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 275 QCFMSACTVASSNLRPMRRLASNIVLLGFIATWFLAASPMRRSVSVNAT 129
QCF+S C + S + + R+ L TW + + M S +AT
Sbjct: 169 QCFLSVCDLCCSLMTQIPRMRHTWDFLEHAPTWISSQTSMSFSAITDAT 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,321,778
Number of Sequences: 59808
Number of extensions: 588441
Number of successful extensions: 1730
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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