Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0803
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         28   0.092
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   3.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   6.0  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 0.092
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 494 PPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAG 637
           PP+   +LVQ    NAE+K+       +  +R+  +++QL A +   G
Sbjct: 45  PPIANCKLVQAPKLNAEVKRAITQQHSERDERLAHVQAQLGAAMGAVG 92


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 317 RKRHCRHHRWRNLDTPCRR 261
           +++  R HR +NL  PCRR
Sbjct: 256 KRQSSRRHR-KNLKDPCRR 273


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 316 ESVIVDITGGETLIRHVEERE*FPF 242
           +  ++D    E L+R+ E+   FPF
Sbjct: 188 QRAVIDFDNNEILLRNGEKHHSFPF 212


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 718 TLDLLGLESGEAEHADLVGDVLPGVRV 638
           T+ +   ++GE+E   +   V+PGV V
Sbjct: 55  TVTITATQTGESEMMVVTSGVIPGVAV 81


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 610 LAPHRDDPVRHLLYVSEPLLFEFGVGEY 527
           L P+   P R + Y S   ++  G+G Y
Sbjct: 14  LQPYDATPARIVCYFSNWAIYRPGIGRY 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,884
Number of Sequences: 336
Number of extensions: 4301
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)