Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0803
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   296   2e-81
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   243   2e-65
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    29   0.71 
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    29   0.71 
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    27   2.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   3.8  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   5.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   8.7  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   8.7  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   8.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.7  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  296 bits (726), Expect = 2e-81
 Identities = 130/250 (52%), Positives = 174/250 (69%), Gaps = 1/250 (0%)
 Frame = +2

Query: 2   IWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHACAH 181
           I++  PTWGNH  + +   L  K Y+Y+DP T G D++G L D++  P+GSIILLHACAH
Sbjct: 160 IYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHACAH 219

Query: 182 NPTGVDPKPSDWEQLSKVIKERKLFPFFDMAYQGFATGDVDNDAFAVRLFVKEGHQVMLA 361
           NPTGVDP  + W+ + K ++++  F   DMAYQGFA+GD   DA+A RLF      ++L 
Sbjct: 220 NPTGVDPTKAQWDDILKTMQKKNHFALLDMAYQGFASGDFARDAYATRLFASSNVPMLLC 279

Query: 362 QSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGARLVQEILTNA 541
           QSFAKNMGLYGERAG  + L  D   AA++ SQ KI++R +YSNPP+ GAR+   IL+N 
Sbjct: 280 QSFAKNMGLYGERAGCFSILANDAEEAARIESQTKILIRALYSNPPVNGARIANHILSNP 339

Query: 542 ELKKQWLGDVKQMADRIITMRSQLRAGIE-GAGNPHPWQHITDQIGMFCFTGLKPEQVER 718
            L++QW G+V  M++R+ +MR  LR  +E    N H W+HITDQIGMFC+TGL P+QV+ 
Sbjct: 340 ALREQWAGEVVGMSERLKSMRKALRNILEKDLKNKHSWKHITDQIGMFCYTGLNPQQVDV 399

Query: 719 LTKXXHVYLT 748
           L K  H+YLT
Sbjct: 400 LAKQYHIYLT 409


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  243 bits (594), Expect = 2e-65
 Identities = 114/249 (45%), Positives = 152/249 (61%)
 Frame = +2

Query: 2   IWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHACAH 181
           +++  PTW  H  +   L +    Y Y+D K   FD +G L  I   PEGSI LLHACAH
Sbjct: 131 VYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAH 190

Query: 182 NPTGVDPKPSDWEQLSKVIKERKLFPFFDMAYQGFATGDVDNDAFAVRLFVKEGHQVMLA 361
           NPTG+DP    W  + + +  RK    FD+AYQGFA+GD++ D++A+  FVK      + 
Sbjct: 191 NPTGIDPTREQWLSIFESLLSRKHLVVFDIAYQGFASGDLNRDSWALNEFVKYNKDFFVC 250

Query: 362 QSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGARLVQEILTNA 541
           QSFAKNMGLYGER G + ++  D +T  KV+SQ+ I+ R   SNPP YGAR+  EIL + 
Sbjct: 251 QSFAKNMGLYGERTGCMHYVAKDASTKNKVLSQLCIVQRNTISNPPAYGARIAAEILNSP 310

Query: 542 ELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFTGLKPEQVERL 721
           +L  +W  D+K M+ RII MR +LR  +     P  W HIT QIGMF FTGL P QV+  
Sbjct: 311 QLFAEWEQDLKTMSSRIIEMRKRLRDSLVALKTPGSWDHITQQIGMFSFTGLTPAQVQFC 370

Query: 722 TKXXHVYLT 748
            +  H+Y +
Sbjct: 371 QERYHLYFS 379


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +2

Query: 332 VKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPL--- 502
           +KEG    + ++F  N+           FL  D   A+ ++       R     P L   
Sbjct: 330 LKEGLNSTVKKTFFDNLNSEKVCPSVSPFLTPDNI-ASSILYSTASFSRSKPDRPRLNLS 388

Query: 503 YGARLVQEILTNAELKKQWLGDVKQMAD 586
              +L+Q  L   +LKKQ+ GD++ +AD
Sbjct: 389 LELKLMQNELNKGQLKKQFKGDLRNLAD 416


>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -1

Query: 264 KNGNNFLSLITLESCSQSLGLG---STPV-GLCAHACNRIMEPSGIFDISSSAPCKSKPL 97
           K    F  L+     SQ + LG   ST V     H C+ +    G FDISS AP   K +
Sbjct: 17  KLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVKGAFDISSKAPIAGK-I 75

Query: 96  VLGS 85
            LGS
Sbjct: 76  TLGS 79


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 406 ARALSVQTHVLSETLRQHDLVSFLDEETD 320
           ARA S+ T +L      HD+  FL+  TD
Sbjct: 295 ARATSMDTTILGNFTENHDVPRFLNRSTD 323


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 586 PDHHDAEPAPRRHRGRRQPAP-LATHHRPDRHVLLHRTQARAGRASDER 729
           P HH    +PR   G R P+P  +      R  +  R + R+ R+S  R
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSR 161


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 251 ISFL*SPWKVVPS-RWAWGQHRWGCVRTRATE*WNLREFLIYPRVLPAN-RNHWSW 90
           + ++ S  KV P   W +   RW C+       WN  E +I  ++L A+ RN   W
Sbjct: 94  LKYVLSKMKVFPKVYWIFNHRRW-CLENAPYPNWNY-EMMITEKLLSADARNFHGW 147


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 222 CSQSLGLGSTPVGLCAHACNRIMEPSGIFDIS-SSAPCK 109
           C  SLG+GS   G+C  A  +  + +    +S  S  CK
Sbjct: 406 CQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSDSCK 444


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 583 GPDHHDAEPAPRRHRGRRQPAP 648
           G  H    P+PR  R RR P+P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSP 363


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 8   LPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSII 160
           LPT TWG  PQ    +N       +         +Q +LE +   P  SI+
Sbjct: 297 LPTVTWGTSPQDVIPINGNIPDPAHVKDNVRAASIQRSLEYMGLKPNTSIV 347


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 302 DNDAFAVRLFVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQ 460
           DND FA ++ + E   ++    +  N G+  ++   LTF    +    +++S+
Sbjct: 826 DNDGFASKINLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERLLSE 878


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 89  PKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPKPSDWEQLSKVIK 241
           PK     LQG ++  S  P G ++L+ + + N   V  +  D  + S + K
Sbjct: 357 PKNTSKQLQGLVQFSSVSPNGELLLMSSSSFNGHSVSVQEYDLTKDSTIRK 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,050
Number of Sequences: 5004
Number of extensions: 69403
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)