Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0803
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0) 256 1e-68
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.) 213 1e-55
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 34 0.11
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0) 34 0.14
SB_48861| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 1.3
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 30 1.7
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 30 2.3
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 29 4.0
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8) 28 9.3
SB_41329| Best HMM Match : Arm (HMM E-Value=8.4e-07) 28 9.3
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 28 9.3
SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 28 9.3
>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
Length = 512
Score = 256 bits (628), Expect = 1e-68
Identities = 117/248 (47%), Positives = 162/248 (65%), Gaps = 1/248 (0%)
Frame = +2
Query: 5 WLPTPTWGNHPQICNTLNLPH-KKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHACAH 181
++ PTWGNH + + ++YRY+ +T D ED+ K PEGSII+LH CAH
Sbjct: 198 YISKPTWGNHLKTLKAVGFTDIREYRYYKAETCSVDFDAMWEDLEKAPEGSIIVLHECAH 257
Query: 182 NPTGVDPKPSDWEQLSKVIKERKLFPFFDMAYQGFATGDVDNDAFAVRLFVKEGHQVMLA 361
NPTGVD W +++ ++K+R+LFP+FD AYQGFA+GDVD DA+AVR F +G +++ A
Sbjct: 258 NPTGVDLSHDQWIKIADIMKKRQLFPYFDTAYQGFASGDVDEDAWAVRYFASQGFELIAA 317
Query: 362 QSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGARLVQEILTNA 541
QSFAKN GLY ERAG + + D+ A ++ SQ+K ++R M+SNPP +GAR+V IL N
Sbjct: 318 QSFAKNFGLYNERAGNVCVVTSDDDCAERIRSQMKALIRPMWSNPPNHGARIVATILCND 377
Query: 542 ELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFTGLKPEQVERL 721
L+ +W V M R++ MR L + ++ G P W H+ DQ GMF FTGL EQV L
Sbjct: 378 TLQAEWRECVHTMGQRMLQMRQALFSKLKELGTPGTWNHVIDQRGMFSFTGLNQEQVAFL 437
Query: 722 TKXXHVYL 745
T+ H+YL
Sbjct: 438 TRKHHIYL 445
>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 213 bits (520), Expect = 1e-55
Identities = 94/160 (58%), Positives = 127/160 (79%)
Frame = +2
Query: 269 MAYQGFATGDVDNDAFAVRLFVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAK 448
MAYQGFATGD D DA AVR+F+++GH+++LAQSFAKNMGLYGERAG ++ + + A +
Sbjct: 1 MAYQGFATGDTDRDAQAVRMFIEDGHKIVLAQSFAKNMGLYGERAGMVSVVGESKEEADR 60
Query: 449 VMSQVKIMVRVMYSNPPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIE 628
++SQ+KI++R MYS+PP++GAR+ +L++ L+ QW +VK MADRII+MR QLR ++
Sbjct: 61 ILSQIKILIRPMYSSPPIHGARIAGLVLSDPALRAQWETEVKGMADRIISMRQQLRDNLK 120
Query: 629 GAGNPHPWQHITDQIGMFCFTGLKPEQVERLTKXXHVYLT 748
G+ H W HITDQIGMFCFTG+KP+QVERL K +YLT
Sbjct: 121 KQGSSHDWSHITDQIGMFCFTGMKPDQVERLIKEFSIYLT 160
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 490 QPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDA--EPAPRRHRGRRQPAPLATHH 663
+P RPPR H+R + ++ R+ D DH+D +P P R R R +P P +
Sbjct: 180 RPGYDDRPPRFDHPHERYG-RPLSPPRRGDPYLDHYDRPLDPYPPRERYRDEPPPRDAYG 238
Query: 664 RPD 672
R D
Sbjct: 239 RHD 241
>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
Length = 646
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 161 LLHACAHNPTGVDPKPSDWEQLSKVIKE---RKLFPFFDMAYQGFATGDVDNDAFAVRLF 331
LL + NPTG + K + + K I + P + AYQ TG D +R+F
Sbjct: 539 LLRSLGLNPTGAEVKKIEKDVDPKGIARVSFEEFLPIYTSAYQKKQTGSADEFVEGLRVF 598
Query: 332 VKEGHQVMLAQSFAKNMGLYGER 400
++G +LA + GE+
Sbjct: 599 DRDGTGTVLAAELRSVLMSLGEK 621
>SB_48861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 490 QPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPD---HHDAEPAPRRHRGRRQPAPLATH 660
+P+A RR + D +RR K +R+ D GPD +D EP R + A
Sbjct: 1 EPNAKRRNDKEPDV-KRRNDKEPDAKRRDDKGPDANIRYDKEPDANRRYDKEPDAERGND 59
Query: 661 HRPD 672
PD
Sbjct: 60 KEPD 63
>SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 31.1 bits (67), Expect = 1.00
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 646 VRVAGALDAGAELAPHRDDPVRHLLYVSEPLLFEFGVG 533
+R GA L P+ DP RH ++EPL+ VG
Sbjct: 118 IRSTGAAQPRLRLRPYAADPARHGAALTEPLVVHLAVG 155
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = -1
Query: 309 SLSTSPVAKP*YAMSKNGNNFLSLITLE--SCSQSLGLGSTPVGLCAHACNRIMEPS--- 145
S S V +P +G ++ S LE SC+ + + GLC H CNR PS
Sbjct: 1291 SQECSDVIEP--VCGSDGKDYRSRCFLEVTSCALKIKITLKNNGLCVHPCNRTQCPSYSR 1348
Query: 144 GIFDISSSAPC---KSKPL 97
+ D S A C KS PL
Sbjct: 1349 CVLDSSLQAKCVCTKSCPL 1367
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +1
Query: 514 PRAGDTHQRRTQKAMARRRKADG-----GPDHHDAEPAPRRHRGRRQPAPLATHHRPDRH 678
PR G QRR + A R++ P +PRR R R P+P HHR R
Sbjct: 202 PRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSP---HHRSHR- 257
Query: 679 VLLHRTQARAGRASDER 729
R+++R+ R R
Sbjct: 258 ---SRSRSRSPRRRHSR 271
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -1
Query: 537 LVSISCTRRAPYSGGLEYMTRTMILTCDITLAAVASSPHRKVRAPAR 397
LV S T RAPYS G T+TM +C I +A + K A R
Sbjct: 168 LVDPSKTIRAPYSQGNSNKTKTMKKSCHIYIALFQETTFAKNDADTR 214
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 538 RRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQ 699
R + K R R +HH + PR+ RG+ P HRPDR + HR +
Sbjct: 84 RESGKGPRRHRLRPHTNEHHPHDCGPRKDRGKCNPG----DHRPDR--IRHRQE 131
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 511 PPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPA--PRRHRGRRQPAPL 651
PP + + + +KA AR R+ PD H+ PA PR+H P PL
Sbjct: 763 PPVNHNMREEQMRKAHARERERAELPDAHEPPPALPPRKH---SDPPPL 808
>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 609 WLRIVMIRSAICFTSPSHCFLSSALVSISC 520
WL +VM+ S+ F S S CFL +A+ SC
Sbjct: 163 WLFMVMVTSSQYFISRSVCFLLTAITIGSC 192
>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = +1
Query: 469 HGPRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAP 648
HGP + P RP D R K RR P HH P R R R +
Sbjct: 375 HGPLSMNPPPI--RPTSFSDNPDRVLGKRTMRREAILNKPRHHLENRIPDRERERCRIDD 432
Query: 649 LATHHR 666
L +HR
Sbjct: 433 LTFYHR 438
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 586 PDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHR 693
P + P RH +P L+ HHRP RH+ HR
Sbjct: 356 PSSFQSYHRPSRHLYCHRPR-LSYHHRPSRHLHYHR 390
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 610 APRRHRGRRQPAPLATHHRPDRHVLLHR 693
+P RH +P L+ HHRP RH HR
Sbjct: 227 SPSRHLHCHRPR-LSNHHRPSRHHHCHR 253
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 613 PRRHRGRRQPAPLATHHRPDRHVLLH 690
P RH +P L+ HHRP RH+ H
Sbjct: 245 PSRHHHCHRPR-LSNHHRPSRHLHCH 269
>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -1
Query: 438 VASSPHRKVRAPARSPYRPMFLAKLCANMTWCPSLTKRRTAKASLSTSPVAKP*YAMSKN 259
+ S P+R +R P S P+ L A +T+C S K S P +A S+N
Sbjct: 305 IMSGPNRPMRVPHSS--EPLTLTNRVAEVTFCRSWNAVLVNKVLCSNLPALSTRHAASRN 362
>SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 212 DW-EQLSKVIKE-RKLFPFFDMAYQGFATGDVDNDAFAVRLFVKEGHQVMLAQSFAKNMG 385
DW +QL +K+ R + + D Y G DVD D + V LFV G + QS ++
Sbjct: 315 DWTQQLYDYVKDTRPINVYIDGPY-GAPGVDVDGDRYKVFLFVSGGIGITPMQSICNDI- 372
Query: 386 LYGERAG 406
L+ R G
Sbjct: 373 LHQRRRG 379
>SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 314 FAVRLFVKEG-HQVMLAQSFAKNMGLYGERAGALTFLCGDEAT 439
F+ L+ E HQ + + K +G E GA++FLC D+A+
Sbjct: 76 FSAALWKNEAMHQKVKERIPMKRLGTSEEIGGAVSFLCSDQAS 118
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 529 THQRRTQKAMARRRKADGGPDHHDAEPAPRR-HRGRRQP 642
TH R +A R D G D+H P P R HR R P
Sbjct: 830 THMR---SPLAEERVRDRGRDNHSISPEPNRLHRINRSP 865
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 562 RRRKADGGP--DHHDAEPA-PRRHRGRRQP 642
RRR++ G DH A P+ PRR +GRR P
Sbjct: 475 RRRRSSSGDSMDHALARPSSPRRDQGRRNP 504
>SB_44258| Best HMM Match : DUF1155 (HMM E-Value=8)
Length = 238
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 100 WFR-FAGSTRGYIKNSRRFHYSVARV 174
WF+ F+ T YI+++ R H+ VAR+
Sbjct: 109 WFKTFSYVTHSYIRSNNRRHFEVARI 134
>SB_41329| Best HMM Match : Arm (HMM E-Value=8.4e-07)
Length = 441
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 329 FVKEGH-QVMLAQSFAKNMGLYGERAGALTFLCGDEATA-AKVMSQVKIMVRVMYSNP 496
FV EG +++L ++N+ + AGAL LC TA AKV++Q V+ P
Sbjct: 30 FVDEGCIELLLELCRSQNLQVKSYAAGALVMLCHQNNTAKAKVIAQGGATTLVLICQP 87
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 334 DEETDCESVIVDITGGETLIRHVEERE 254
+ E+ CESVIV++ T+I+ ++ RE
Sbjct: 646 ERESVCESVIVNMKARSTVIKDIDTRE 672
>SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 604 EPAPRRHRGRRQPAPLATHHRPDRHVLLHR--TQARAGRASD 723
+PAPR P PL T DR V R Q R R SD
Sbjct: 782 QPAPRGEGSNLPPLPLHTSGEADRRVETFRAWAQTRPSRRSD 823
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 323 RLFVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATA-AKVMSQVKIMVRVMYSNPP 499
R + G +A+ F+K GLYGE A F+ ++ Q K + + Y
Sbjct: 379 RDLINAGVDKDIAKKFSKGAGLYGE--NAKKFIKKNKLQMFTLTRGQQKKLFKNAYKEKK 436
Query: 500 LYGARLVQEILTNAELK 550
Y ++++ N+ELK
Sbjct: 437 SYAKHILEKYSQNSELK 453
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,896,533
Number of Sequences: 59808
Number of extensions: 590663
Number of successful extensions: 2008
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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