Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0802
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9V1Y4 Cluster: Putative uncharacterized protein; n=1; ...    37   0.46 
UniRef50_Q493V0 Cluster: Putative exported protein; n=1; Candida...    35   2.5  
UniRef50_UPI0000F2D63A Cluster: PREDICTED: hypothetical protein;...    34   3.3  

>UniRef50_Q9V1Y4 Cluster: Putative uncharacterized protein; n=1;
           Pyrococcus abyssi|Rep: Putative uncharacterized protein
           - Pyrococcus abyssi
          Length = 111

 Score = 37.1 bits (82), Expect = 0.46
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 467 ARHELKDNWRKVVRRKKTHWETRLRPRYLTSQRN*GKPHTDTRARSPTKPLVNNFIDLNI 646
           A H  +DNW+ V  +KK  WE+R+ P+ +       +P+TD+     + P +N    L I
Sbjct: 36  ALHHNRDNWKVV--KKKNIWESRIEPKIVGIFEVVSEPYTDSSRNFKSPPHLNETSPLRI 93


>UniRef50_Q493V0 Cluster: Putative exported protein; n=1; Candidatus
            Blochmannia pennsylvanicus str. BPEN|Rep: Putative
            exported protein - Blochmannia pennsylvanicus (strain
            BPEN)
          Length = 1279

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -3

Query: 298  KIQSNIGPNFCCTLDPKLLCLKPNIKIPFKLLRIAVHVTKHTNFSLKN---SQPLKIIIA 128
            +I+  I P+F CT+ P+ + ++ N+ IP+  + +  +    TN S +       L++I+ 
Sbjct: 975  EIKMKISPDFNCTITPEKIHIEGNVAIPWAHIEVKEYSKNITNISSEEILLDDNLQLILN 1034

Query: 127  QKKHQEFHFSGKKYKLAGN 71
              K+    FS       GN
Sbjct: 1035 NSKNLFISFSANINVCLGN 1053


>UniRef50_UPI0000F2D63A Cluster: PREDICTED: hypothetical protein; n=1;
            Monodelphis domestica|Rep: PREDICTED: hypothetical
            protein - Monodelphis domestica
          Length = 1645

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
 Frame = +1

Query: 475  RTKRQLEEGSSAEENSLGDSSE-----ATLPNIAKKLRKAT-------H*HPRAVPHQTP 618
            RT+R L    +A++NS+  + +     A +  I +K+RK T       + +P +V HQT 
Sbjct: 1102 RTRRTLRANLAAKKNSMIKAEKILSYMAEMKEIKRKIRKLTEIPPKYSYANPNSVDHQTL 1161

Query: 619  RK*LHRLKY 645
             K LHR+KY
Sbjct: 1162 WKILHRIKY 1170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,184,687
Number of Sequences: 1657284
Number of extensions: 11407194
Number of successful extensions: 30057
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30034
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)