Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0802
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    29   0.71 
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    28   1.6  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   2.9  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   6.6  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 220 IPFKLLRI--AVHVTKHTNFSLKNSQPLKIIIAQKKHQEFHFSGKKYKLAGN 71
           +P++ +R   ++H     NFS  NS+ +  I AQ   +  +   KK KL  N
Sbjct: 371 LPYEFVRFNNSMHSIGDNNFSYNNSEAVLQIFAQSVPRILNIEAKKSKLENN 422


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 320 LFQLCRIKNPIQHWSKLLLYVRSETIVFKAKYQNSIQTITDS 195
           L  LCR KNP  +WS + + V    I+ K  Y   ++ I D+
Sbjct: 230 LSNLCRGKNPPPNWSTISVAV---PILAKLLYSEDVEIIVDA 268


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 647 QYLSL*SYLRGVW-WGTARGCQCVAFLSFFA 558
           +YL   S    ++ WG A  C C+A +SF A
Sbjct: 280 EYLGFVSTFMAIFIWGLAAWCYCLAMVSFLA 310


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 175  TNFSLKNSQPLKIIIAQKKHQEF-HFSGKKYKLAGNTTRKS 56
            T  S+    P  + + QKKH+ F H    KYK +G   RKS
Sbjct: 1178 TKQSIAKPSPHTLRVPQKKHKHFYHRDDGKYK-SGTNLRKS 1217


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 157 NSQPLKIIIAQKKHQEFH 104
           NS P   + +Q KHQEFH
Sbjct: 120 NSSPPNSLSSQPKHQEFH 137


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 514 ENSLGDSSEATLPNIAKKLRK 576
           + SL   SEA+LPN++K  RK
Sbjct: 395 KQSLASPSEASLPNLSKYSRK 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,657
Number of Sequences: 5004
Number of extensions: 50677
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)