Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0802
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    30   1.7  
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    30   2.3  
08_02_0360 + 16196712-16197560,16198126-16198875                       29   3.0  
10_07_0030 - 12044953-12045524,12045567-12045876                       29   3.9  
08_02_0118 + 12772636-12772910,12773151-12773254,12774097-127744...    29   3.9  
03_05_0310 + 23008915-23009841,23010401-23011162                       29   3.9  
12_01_1102 + 11622839-11623341,11623441-11623750                       29   5.2  
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166...    28   9.1  
06_03_0355 + 19822110-19824491                                         28   9.1  
02_02_0554 - 11434744-11435364,11435741-11436442                       28   9.1  

>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 437 HPQTTQTLQSARHELKDNWRKVVRRKKTHWETRL 538
           HPQT+   +++  ++K+  +K+V +  T W+ RL
Sbjct: 696 HPQTSGQAETSNKQIKNILQKIVNKMGTGWKDRL 729


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +3

Query: 150 CEFLSEKFVCLVTCTAIRNSLNGILIFGFKHNSFG 254
           C FL  +F+ L+TCT IRNS +    F F H  FG
Sbjct: 812 CLFL--EFLMLMTCTTIRNSRS----FKFTHKKFG 840


>08_02_0360 + 16196712-16197560,16198126-16198875
          Length = 532

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 437 HPQTTQTLQSARHELKDNWRKVVRRKKTHWETRL 538
           HPQT+   ++   ++K+  +K V++  T W+ RL
Sbjct: 105 HPQTSGQAETLNKQIKNIMQKTVKKMGTGWKDRL 138


>10_07_0030 - 12044953-12045524,12045567-12045876
          Length = 293

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 437 HPQTTQTLQSARHELKDNWRKVVRRKKTHWETRL 538
           HPQT+   +++  ++K+  +K V + +T W+ +L
Sbjct: 116 HPQTSGRAETSNKQIKNILQKTVNKMETGWKDKL 149


>08_02_0118 +
           12772636-12772910,12773151-12773254,12774097-12774487,
           12774795-12774870,12775030-12775047
          Length = 287

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 437 HPQTTQTLQSARHELKDNWRKVVRRKKTHWETRL 538
           HPQT+   +++  ++K+  +K V +  T W+ RL
Sbjct: 33  HPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRL 66


>03_05_0310 + 23008915-23009841,23010401-23011162
          Length = 562

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 437 HPQTTQTLQSARHELKDNWRKVVRRKKTHWETRL 538
           HPQT+   +++  ++K+  +K V +  T W+ RL
Sbjct: 131 HPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRL 164


>12_01_1102 + 11622839-11623341,11623441-11623750
          Length = 270

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 437 HPQTTQTLQSARHELKDNWRKVVRRKKTHWETRL 538
           HPQT+   +++  ++K+  +K + +  T W+ RL
Sbjct: 131 HPQTSGQAETSNKQIKNILQKTINKMGTGWKDRL 164


>07_03_0909 +
           22512313-22512474,22513151-22513465,22513539-22516633,
           22516812-22516910,22517031-22517379
          Length = 1339

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 14  LSRGLMSP-MSEFMRTFPCSISRQFVFLSTEVK 109
           LS GLM P MS F  TFPC+++ +  FLS   K
Sbjct: 369 LSLGLMPPPMSLFHLTFPCAVN-EVSFLSYNSK 400


>06_03_0355 + 19822110-19824491
          Length = 793

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 371 QKTRWTRSLXXXXXXXXXXLQRHPQTTQTLQSARHELKDNWRKVVRR 511
           QK R  + +          LQ   Q  Q+L SAR E ++ W+  +RR
Sbjct: 493 QKERELQDVLVEKQYLANMLQEKEQIIQSLNSARFEQENKWQAELRR 539


>02_02_0554 - 11434744-11435364,11435741-11436442
          Length = 440

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 437 HPQTTQTLQSARHELKDNWRKVVRRKKTHWETRL 538
           HPQT+   +++  ++K+  +K V +  T W+ +L
Sbjct: 60  HPQTSGQAETSNKQIKNILQKTVNKMGTGWKDKL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,901,795
Number of Sequences: 37544
Number of extensions: 312178
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)