Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0802
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)                32   0.57 
SB_51319| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   2.3  
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_4059| Best HMM Match : Vicilin_N (HMM E-Value=0.83)                 29   4.0  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   29   5.3  

>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
          Length = 517

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 181 KHTNFSLKNSQPLKIIIAQKKHQEFHFSGKKYKLAGNTTRKSSHE 47
           KH NFSL  + P++I +   KHQ +      Y  +G   ++   E
Sbjct: 165 KHENFSLTTNGPMRISLVSDKHQAYSGFRATYSTSGQQDQRVGAE 209


>SB_51319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 283 CWIGFFILHN*NRRKLVTDCVNE 351
           CW+  F++H   R KL +DC++E
Sbjct: 67  CWVADFLMHRKQRVKLSSDCLSE 89


>SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 389

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 461 QSARHELKDNWRKVVRRKKTHWETRLRPRYLTSQR 565
           Q+ R+ LK  W++++RRK   +  RL P  LTS R
Sbjct: 311 QNFRNALKTEWKRLIRRKDDSFLARL-PGVLTSLR 344


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -3

Query: 298 KIQSNIGPNFCCTLDPKLLCLKPNIKIPFKLLRIAVHVTKHTNFSLKNSQPLKIIIAQKK 119
           ++Q  +   F   + P+L   K  I+  +KL+   V   ++   SLKNS P  + I    
Sbjct: 45  RLQDRLQDAFSHAVAPRLQVDKKTIEKTWKLMDKVVKSCQNPRMSLKNSPPYILDILPDT 104

Query: 118 HQEFHFSGKKYK 83
           +Q       KY+
Sbjct: 105 YQHLKLIVSKYE 116


>SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 283 CWIGFFILHN*NRRKLVTDCVNE 351
           CW+G F+L+   R KL  DC +E
Sbjct: 219 CWVGDFLLNRRQRLKLSHDCFSE 241


>SB_4059| Best HMM Match : Vicilin_N (HMM E-Value=0.83)
          Length = 257

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 431 QRHPQTTQTLQSARHELKDNWRKVVRRKKTHW 526
           Q+HPQT + LQ+     K+   K  R K T W
Sbjct: 32  QKHPQTKRALQNVNPLTKELISKETRHKDTPW 63


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 265 CTLDPKLLCLKPNIKIPFKLLRIAVHVTKHTNFSLKN 155
           C   P    LKP  K P  L+R    + KH N SL N
Sbjct: 749 CHAAPLRSSLKPCFKEPKSLIRTETRLAKHNNDSLVN 785


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 505 SAEENSLGDSSEATLPNIAKKLRKATH*HPRAVPHQTPRK*LHRLKYC 648
           S E ++   SS   +P I K+L  A H  P  +P  +P K  +  KYC
Sbjct: 305 SLEFSNTPMSSLVHVPAIVKELDWANHVWPTDLPEDSPHKKPYVQKYC 352


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 360 RGILIHAVRYEFTSVSVMQNKKSNPTLVQTFV 265
           R +++H  RY F  V+  Q KK N   +Q F+
Sbjct: 747 RVLILHLKRYNFDKVTDQQEKKQNNINLQKFI 778


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,011,207
Number of Sequences: 59808
Number of extensions: 374620
Number of successful extensions: 970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)