Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0799
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    26   0.23 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    26   0.23 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   0.94 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   2.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.7  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   8.8  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   8.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 182  FVEKVAKDGDNGYINLEYSGGIQIELVVCENKAMEKKGLKMRRISGDQREYGKLCEQL 355
            F+   A+D + G   LE+S     + ++C  KA  K+  ++R+I    R+  +  E L
Sbjct: 1065 FLGANAQDDEGG---LEFSVNKLFKCMICTYKADNKENEQLRKIQESLRDLNRKIESL 1119


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 182  FVEKVAKDGDNGYINLEYSGGIQIELVVCENKAMEKKGLKMRRISGDQREYGKLCEQL 355
            F+   A+D + G   LE+S     + ++C  KA  K+  ++R+I    R+  +  E L
Sbjct: 1065 FLGANAQDDEGG---LEFSVNKLFKCMICTYKADNKENEQLRKIQESLRDLNRKIESL 1119


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 217 LHKSRIFWWNSNRAGRVRKQ 276
           L ++RI  W SNR  R+RKQ
Sbjct: 259 LTEARIQVWFSNRRARLRKQ 278


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 209 LRLWPPSPR 183
           LRLWPP+P+
Sbjct: 339 LRLWPPAPQ 347


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 480 FGSPASNDGHPSARPAPLVCPHKRGDI 560
           +G P S    P   P P   P+ R DI
Sbjct: 65  YGGPPSGGQPPQGMPYPRFPPYDRMDI 91


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 565 ILFRDKKNRLDFSNS 609
           +  R+  NR+DFSN+
Sbjct: 24  VFVREPPNRIDFSNT 38


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 566 FYFVIKKIGLIFQIPF 613
           FY V   +   F+IPF
Sbjct: 34  FYVVFSSVSTFFKIPF 49


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 566 FYFVIKKIGLIFQIPF 613
           FY V   +   F+IPF
Sbjct: 34  FYVVFSSVSTFFKIPF 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,379
Number of Sequences: 336
Number of extensions: 3746
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)