Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0799
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   1.8  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    27   2.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.4  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   7.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.5  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   9.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.5  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +2

Query: 59  VSCVQEYYEVALSTFCSKLDSTRIVELLKDAINTKVP 169
           V+CVQ + E  L+  C+      ++++  ++++ K+P
Sbjct: 262 VNCVQLFDETPLALVCTDSKDAMLIDIRSNSVSAKLP 298


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 381 LSHLPFSPPLIFDYRNVRIDNDFTMT 458
           +SHLP+ P L F   NV + +D   T
Sbjct: 152 ISHLPYGPTLSFSLHNVVLRHDIPNT 177


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
 Frame = +1

Query: 19  ARREDADPAESPEGVVRAGILRSCPVHVLLQ-----IGLDQNSRTPERRHQHQS 165
           +RRE   PA SP     AG+  + P H            + N+  P   H H S
Sbjct: 259 SRRESESPANSPNITSSAGMTHAQPTHNPTSSYGNGASTNYNASRPPSNHPHSS 312


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 447 SHYQSLHFGNQISVEGRTGGDSKI 376
           S + S H  +Q +VEG+ GGDS +
Sbjct: 208 SIWLSRHGESQFNVEGKIGGDSSL 231


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 598 NQADFFYHEIKSTMSPRLCG 539
           ++ D   H IKST++ RLCG
Sbjct: 527 SEIDSQLHTIKSTIAARLCG 546


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 150 PSTPKSRLRVSSWRRWPKTE 209
           PSTPK ++ V  +R++ +TE
Sbjct: 76  PSTPKDQVEVKKFRQFSETE 95


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 605 FEKSSRFFLSRNKIHNVSALVWAH*RRWT-RAGVSVIRGGTSENFNLQ*HCHCEV 444
           F+     FLS NKI      V+   R W+ +   S +      NF L  HCH E+
Sbjct: 49  FDCEEELFLSANKIFYSKLRVYQTVRHWSLKQNWSSMSLDQKRNFIL--HCHHEL 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,403
Number of Sequences: 5004
Number of extensions: 62337
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)