Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0799
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 32 0.34
10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214... 31 0.80
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 31 0.80
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 30 1.8
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304... 29 4.2
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 28 7.4
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 28 7.4
03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429 27 9.8
03_03_0059 + 14149796-14150350,14152303-14152433,14153479-141535... 27 9.8
>09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 104 CSKLDSTRIVELLKDAINTKVPPQSIFVEKVAKDGDNGYINLEYSGG-IQIELVVCENKA 280
C K R + ++A K +F E + K G +G+IN++Y + +EL + ++ +
Sbjct: 921 CQKALDMRWKKFQRNAALLKRQLTWLFNEHLGKKGISGFINVDYKERLLSVELTMPQDSS 980
Query: 281 MEKKGLKMRRISGDQREYGKLC 346
+ R +SG +R + LC
Sbjct: 981 RDTI-TDTRGLSGGERSFSTLC 1001
>10_08_0603 -
19120434-19120538,19121209-19121310,19121430-19121462,
19122049-19122216,19122311-19122373,19122514-19122624,
19122926-19123035,19123150-19123446,19123632-19123710,
19123811-19123919,19124000-19124041,19124743-19124873,
19126150-19126797
Length = 665
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 185 RRYS-EAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSI 75
R YS EA +W ++ +LL S P W+RT +G RS+
Sbjct: 357 RSYSTEADMWSIGVITYILLCGSRPFWARTESGIFRSV 394
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 185 RRYS-EAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSI 75
R YS EA +W ++ +LL S P W+RT +G RS+
Sbjct: 308 RSYSMEADIWSIGVITYILLCGSRPFWARTESGIFRSV 345
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 185 RRYS-EAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSI 75
R YS EA +W ++ +LL S P W+RT +G RS+
Sbjct: 324 RCYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRSV 361
>07_03_1452 -
26629219-26629428,26630113-26630280,26630363-26630425,
26630499-26630606,26630820-26630932,26631026-26631322,
26631424-26631502,26631733-26631841,26631927-26631968,
26632467-26632597,26633482-26633623,26633713-26633828,
26634121-26634657
Length = 704
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 176 SEAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSI 75
+EA +W ++ +LL S P W+RT +G R++
Sbjct: 410 TEADMWSIGVIAYILLCGSRPFWARTESGIFRAV 443
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = +2
Query: 14 CKPEEKMPILLSPQKVSCVQEYYEVALSTFCSKLDSTRIVELLKDAINTKVPPQSIFVEK 193
CKP PI+LSP+KVS + Y A++++ L+ + + + ++ + +PP F+ +
Sbjct: 658 CKP----PIVLSPKKVSTAKFLYGCAINSWI--LNPSWLFDSIQAGV--MLPPGKYFIRQ 709
Query: 194 V 196
V
Sbjct: 710 V 710
>01_05_0659 -
24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 238 WWNSNRA--GRVRKQSHGEEGLEDEKDLR 318
WW+++ R R S GE+G +DE+ LR
Sbjct: 29 WWSADNGVFSRSRASSSGEDGEDDEEALR 57
>03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429
Length = 483
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 173 QSIFVEKVAKDGDNGYINL-EYSGGIQIELVVCENKAMEKKGLKMRRISGDQREYGKLCE 349
+ + VE +D D G + + ++ +V E K + KM+ GDQR + +
Sbjct: 405 RGVGVEVAREDDDEGSFGRHDVAAAVRRVMVEDERKVFGENARKMKEAVGDQRRQEQYFD 464
Query: 350 QLITSL 367
+L+ L
Sbjct: 465 ELVERL 470
>03_03_0059 +
14149796-14150350,14152303-14152433,14153479-14153520,
14153632-14153740,14154262-14154340,14154437-14154733,
14154820-14154932,14155375-14155482,14155554-14155616,
14155698-14155865,14156283-14156348
Length = 576
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 176 SEAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSI 75
+EA +W + +LL S P W+RT +G R++
Sbjct: 330 TEADMWSIGVIVYILLCGSRPFWARTESGIFRAV 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,306,518
Number of Sequences: 37544
Number of extensions: 434592
Number of successful extensions: 1227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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