Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0799
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               38   0.009
SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.050
SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)               29   3.3  
SB_34524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_7012| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_6801| Best HMM Match : Flu_NS2 (HMM E-Value=4.2)                    28   5.7  
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             28   7.6  

>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 239  GGIQIELVVCE-NKAMEKKGLKMRRISGDQREYGKLCEQLI 358
            G + +E+ VC         GL++RRISG+Q +Y KLC +L+
Sbjct: 1078 GSVTMEIEVCHLPDPYSLNGLRLRRISGNQWQYKKLCHELL 1118


>SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 245 IQIELVVCENKAMEKKGLKMRRISGDQREYGKLCEQLITS 364
           ++ E+ VC    ME  G++ +R+ GD   Y K+CE L+ S
Sbjct: 531 LEFEMEVCHIPKMELIGIRRKRMKGDTWAYKKVCEGLLGS 570


>SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)
          Length = 1082

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 438 QSLHFGNQISVEGRTGGDSKIQTVKLVMSCSH 343
           +S HFG ++  EG T  D  +   KL + CS+
Sbjct: 105 ESFHFGTRVQKEGETISDFIVALKKLSIHCSY 136


>SB_34524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 238 WWNSNRAGRVRKQSHGEEGLEDEKDL 315
           W   NR G+ +    GEE  EDEKD+
Sbjct: 6   WREQNRRGKRQSNCVGEEDEEDEKDM 31


>SB_7012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 238 WWNSNRAGRVRKQSHGEEGLEDEKDL 315
           W   NR G+ +    GEE  EDEKD+
Sbjct: 34  WREQNRRGKRQSNCVGEEDEEDEKDM 59


>SB_6801| Best HMM Match : Flu_NS2 (HMM E-Value=4.2)
          Length = 207

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 504 RHS-RRDFRKL*LAITLSL*SHYQSLHFGNQISVEGRTGGDSKIQTVKLVMSCSH 343
           RH+ RRD   L  A+ L      +S HFG ++  E  T  D  +   KL + C++
Sbjct: 74  RHTIRRDSASLREALDLPPLEIAESFHFGTRVQKERETISDLIVALKKLSIHCNY 128


>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 189 RRWPKTETTAT*I*NILVEFKSSWSCAKTKPWRRRA*R*EGSQEIKGNTGSCVNSS 356
           R   K E     + +++      W   K KPWRRR      S E+  +T SCV  +
Sbjct: 108 RETDKEEQDDEEVKDLVPALPEGWPAFKNKPWRRR------SCELVKSTSSCVRKA 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,618,974
Number of Sequences: 59808
Number of extensions: 473245
Number of successful extensions: 1193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)