Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0799
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061273-1|AAL28821.1|  271|Drosophila melanogaster LD19671p pro...    72   8e-13
AE013599-2749|AAF57651.3|  766|Drosophila melanogaster CG18604-P...    72   8e-13
BT029145-1|ABJ17079.1|  428|Drosophila melanogaster RT01021p pro...    28   9.6  
AF086820-1|AAC36333.1|  428|Drosophila melanogaster paired-like ...    28   9.6  
AE014298-2608|AAF48762.1|  428|Drosophila melanogaster CG6269-PA...    28   9.6  

>AY061273-1|AAL28821.1|  271|Drosophila melanogaster LD19671p
           protein.
          Length = 271

 Score = 71.7 bits (168), Expect = 8e-13
 Identities = 32/55 (58%), Positives = 46/55 (83%), Gaps = 4/55 (7%)
 Frame = +2

Query: 221 INLEYSGGIQIELVVCENKAMEK----KGLKMRRISGDQREYGKLCEQLITSLTV 373
           ++LEYSGG+QIEL VCE ++ +     KG+K+RRISGDQ EYGK+C+QLI+++T+
Sbjct: 212 LSLEYSGGLQIELQVCEGRSRDHHGAGKGIKLRRISGDQFEYGKICQQLISTITM 266



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 80  YEVALSTFCSKLDSTRIVELLKDAINTKVPPQSIFVEK 193
           YEV L   CS LDSTRI+E++K  I++ +PP+   + K
Sbjct: 128 YEVPLPHECSNLDSTRILEMVKQTIDSTMPPKGFVLHK 165


>AE013599-2749|AAF57651.3|  766|Drosophila melanogaster CG18604-PA
           protein.
          Length = 766

 Score = 71.7 bits (168), Expect = 8e-13
 Identities = 32/55 (58%), Positives = 46/55 (83%), Gaps = 4/55 (7%)
 Frame = +2

Query: 221 INLEYSGGIQIELVVCENKAMEK----KGLKMRRISGDQREYGKLCEQLITSLTV 373
           ++LEYSGG+QIEL VCE ++ +     KG+K+RRISGDQ EYGK+C+QLI+++T+
Sbjct: 707 LSLEYSGGLQIELQVCEGRSRDHHGAGKGIKLRRISGDQFEYGKICQQLISTITM 761



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 80  YEVALSTFCSKLDSTRIVELLKDAINTKVPPQSIFVEK 193
           YEV L   CS LDSTRI+E++K  I++ +PP+   + K
Sbjct: 623 YEVPLPHECSNLDSTRILEMVKQTIDSTMPPKGFVLHK 660


>BT029145-1|ABJ17079.1|  428|Drosophila melanogaster RT01021p
           protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 217 LHKSRIFWWNSNRAGRVRKQSHGEEG 294
           L +SR+  W  NR  +VRK+ H ++G
Sbjct: 122 LKESRVAVWFQNRRAKVRKREHTKKG 147


>AF086820-1|AAC36333.1|  428|Drosophila melanogaster paired-like
           homeodomain proteinUNC-4 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 217 LHKSRIFWWNSNRAGRVRKQSHGEEG 294
           L +SR+  W  NR  +VRK+ H ++G
Sbjct: 122 LKESRVAVWFQNRRAKVRKREHTKKG 147


>AE014298-2608|AAF48762.1|  428|Drosophila melanogaster CG6269-PA
           protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 217 LHKSRIFWWNSNRAGRVRKQSHGEEG 294
           L +SR+  W  NR  +VRK+ H ++G
Sbjct: 122 LKESRVAVWFQNRRAKVRKREHTKKG 147


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,776,233
Number of Sequences: 53049
Number of extensions: 707879
Number of successful extensions: 2058
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2056
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)