Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0799
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical ...    33   0.18 
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical
           protein W03G1.6a protein.
          Length = 726

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 239 GGIQIELVVCENKAMEKKGLKMRRISGDQREYGKLCEQLI 358
           G + +EL +   +  +K G++ +R+ GD   Y K+CE+++
Sbjct: 681 GWMTVELEIVRLQMFDKVGIRRKRLKGDAFMYKKVCEKIL 720


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = -3

Query: 378 IQTVKLVMSCSHSFPYSL*SPEILLIFKPFFSMALFSHTTSSI*IPPEYSRFM*PLSPSL 199
           +Q  +    C   FP S+ S     IF   F +  FS   +    PP Y     P +PS 
Sbjct: 2   VQIYRSSFQCFLFFPRSINSDISTFIFLKLFLLIFFSVGGAHPMFPPNYKSMAPPTNPSF 61

Query: 198 ATFS 187
             FS
Sbjct: 62  DRFS 65


>Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical
           protein F57B7.1b protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 275 CFRTRPARFEFHQNILDLCSRCLRLWPPSPRRYSEA 168
           C  +   R EFH+  +    RCLR+  PS RR S+A
Sbjct: 364 CSMSGQFRNEFHRVFVPAKVRCLRMSSPSIRRPSDA 399


>Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical
           protein F57B7.1a protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 275 CFRTRPARFEFHQNILDLCSRCLRLWPPSPRRYSEA 168
           C  +   R EFH+  +    RCLR+  PS RR S+A
Sbjct: 364 CSMSGQFRNEFHRVFVPAKVRCLRMSSPSIRRPSDA 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,067,029
Number of Sequences: 27780
Number of extensions: 355383
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)