Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0799
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 311 ISGDQREYGKLCEQLITSLTV*IFESPPVLPSTDI*LP 424
           +  D  E   LC  ++ SLTV       ++P T + +P
Sbjct: 273 LPSDSGEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIP 310


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 49  SPEGVVRAGILRSCPVHVLLQIGLDQNSRTPERRHQHQS 165
           SP+  V A  +R   +HVL ++ + +   TP +R  + S
Sbjct: 331 SPQTHVMAPWVRRVFIHVLPRLLVMRRYNTPSKRSDYDS 369


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 311 ISGDQREYGKLCEQLITSLTV*IFESPPVLPSTDI*LP 424
           +  D  E   LC  ++ S T+       ++PST + LP
Sbjct: 259 LPADSGEKIALCINILLSQTMFFLLISEIIPSTSLALP 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,388
Number of Sequences: 438
Number of extensions: 4428
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)