Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0799
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46700.1 68415.m05827 calcium-dependent protein kinase, putat...    31   0.50 
At3g50530.1 68416.m05526 calcium-dependent protein kinase, putat...    29   3.5  
At2g41140.1 68415.m05081 calcium-dependent protein kinase, putat...    29   3.5  
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    28   4.7  
At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase...    28   6.2  
At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase...    28   6.2  
At4g34540.1 68417.m04908 isoflavone reductase family protein sim...    27   8.2  
At3g47340.3 68416.m05147 asparagine synthetase 1 [glutamine-hydr...    27   8.2  
At3g47340.2 68416.m05146 asparagine synthetase 1 [glutamine-hydr...    27   8.2  
At3g47340.1 68416.m05145 asparagine synthetase 1 [glutamine-hydr...    27   8.2  

>At2g46700.1 68415.m05827 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase homolog MCK1 [Zea mays]
           gi|1839597|gb|AAB47181
          Length = 595

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 185 RRYS-EAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSIPARTTP 57
           R YS EA +W    ++ +LL  S P W+RT +G  R++  RT P
Sbjct: 322 RSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRTV-LRTEP 364


>At3g50530.1 68416.m05526 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820
          Length = 601

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 185 RRYS-EAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSI 75
           R YS EA +W    +  +LL  S P W+RT +G  R++
Sbjct: 327 RSYSTEADIWSVGVIVYILLCGSRPFWARTESGIFRAV 364


>At2g41140.1 68415.m05081 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820
          Length = 576

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 176 SEAGLWC*WRLSGVLLFWSSPIWSRTWTGQLRSI 75
           +EA +W    ++ +LL  S P W+RT +G  R++
Sbjct: 306 TEADMWSIGVIAYILLCGSRPFWARTESGIFRAV 339


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 ELVVCENKAMEK-KGLKMRRISGDQREYGKLCEQLITSLT 370
           E++ C   A++  KG K +R SG+ R+  K C    T LT
Sbjct: 248 EIIACNKNALKVCKGNKRKRRSGEGRKRRKKCSVAKTRLT 287


>At5g50950.2 68418.m06319 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 499

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 37  DPAESPEGVVRA-GILRSCPVHVLLQIGLD 123
           D    PE +VRA G+L+ C   V ++ GLD
Sbjct: 73  DRERMPEPIVRAFGVLKKCAAKVNMEYGLD 102


>At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 510

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 37  DPAESPEGVVRA-GILRSCPVHVLLQIGLD 123
           D    PE +VRA G+L+ C   V ++ GLD
Sbjct: 73  DRERMPEPIVRAFGVLKKCAAKVNMEYGLD 102


>At4g34540.1 68417.m04908 isoflavone reductase family protein
           similar to phenylcoumaran benzylic ether reductase
           homolog Fi1 [Forsythia x intermedia][GI:7578895];
           contains isoflavone reductase domain PF02716
          Length = 306

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +2

Query: 41  LLSPQKVSCVQEYYEVALSTFCSKLDSTRIVE--LLKDAINTKVPP--QSIFVEKVAKDG 208
           L  P  +  + +  E+       KL+ T   E  LLK    T  P   + +F+  V   G
Sbjct: 212 LSPPGNICSMNDLVELWEGKIEKKLEKTFATENQLLKKIKETPYPDNMEMVFIYSVFIKG 271

Query: 209 DNGYINLEYSGGI 247
           D+ Y ++E  GG+
Sbjct: 272 DHTYFDIESCGGV 284


>At3g47340.3 68416.m05147 asparagine synthetase 1
           [glutamine-hydrolyzing] / glutamine-dependent asparagine
           synthetase 1 (ASN1) identical to SP|P49078 Asparagine
           synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
           (Glutamine- dependent asparagine synthetase)
           {Arabidopsis thaliana}
          Length = 456

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 292 GLEDEKDLRRSKGIREAV*TAHHQF 366
           GLE   DL+  K + E + T HH+F
Sbjct: 268 GLEGSPDLKAGKEVAEYLGTVHHEF 292


>At3g47340.2 68416.m05146 asparagine synthetase 1
           [glutamine-hydrolyzing] / glutamine-dependent asparagine
           synthetase 1 (ASN1) identical to SP|P49078 Asparagine
           synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
           (Glutamine- dependent asparagine synthetase)
           {Arabidopsis thaliana}
          Length = 512

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 292 GLEDEKDLRRSKGIREAV*TAHHQF 366
           GLE   DL+  K + E + T HH+F
Sbjct: 268 GLEGSPDLKAGKEVAEYLGTVHHEF 292


>At3g47340.1 68416.m05145 asparagine synthetase 1
           [glutamine-hydrolyzing] / glutamine-dependent asparagine
           synthetase 1 (ASN1) identical to SP|P49078 Asparagine
           synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
           (Glutamine- dependent asparagine synthetase)
           {Arabidopsis thaliana}
          Length = 584

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 292 GLEDEKDLRRSKGIREAV*TAHHQF 366
           GLE   DL+  K + E + T HH+F
Sbjct: 268 GLEGSPDLKAGKEVAEYLGTVHHEF 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,278
Number of Sequences: 28952
Number of extensions: 339047
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)