Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0797
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MN99 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_Q9V0J2 Cluster: ABC transporter integral membrane prote...    31   8.8  

>UniRef50_A0MN99 Cluster: Putative uncharacterized protein; n=1;
           Thermus phage phiYS40|Rep: Putative uncharacterized
           protein - Thermus phage phiYS40
          Length = 650

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -1

Query: 237 NNYKRLSLKDFTRFCLCFVLTLKIGIMRHALLNHTKYLQDESLKSVIQIKF*RYIYTVSD 58
           N Y R    + T+F   + L +   + R ++  +  Y++  SL       F  YI  V +
Sbjct: 282 NTYIRKIYSNETKFLEPYSLYVSTSVNRKSITLYLGYIRVVSLDDNFNFSFSNYIPFVRE 341

Query: 57  TGVEFFKLNYLPS 19
              EF+K +YL S
Sbjct: 342 NPKEFYKFSYLAS 354


>UniRef50_Q9V0J2 Cluster: ABC transporter integral membrane protein;
           n=7; Thermococcaceae|Rep: ABC transporter integral
           membrane protein - Pyrococcus abyssi
          Length = 533

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = -1

Query: 318 LLLQYIPMPKSLSXSHSAN*CVNNVMLNNYKRLSLKDFTRFCLCFVLTLKIGIMRHALLN 139
           L L Y+PM + +S   S    ++ +    Y+R+    F +  L  + TL +GI    + +
Sbjct: 24  LSLFYVPMVRVISLGFSLTSLLSVLSDEYYRRVIAFTFVQALLSTLATLAVGIPGAYVFS 83

Query: 138 HTKYLQDESLKSVIQIKF 85
           H  +     L+S+I + F
Sbjct: 84  HYDFPGKRFLRSLITVPF 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,673,632
Number of Sequences: 1657284
Number of extensions: 5559375
Number of successful extensions: 11253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11253
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)