Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0797
         (450 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    25   0.43 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.1  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 107 FNDSSCKYFVWFNRACLIIPIFNVKTKHRQKRVKSF 214
           +N+++ KY+ W N  CL + I  +      K+++ F
Sbjct: 48  YNNTNRKYY-WLNVCCLNLSIVTIFFNFATKKLEQF 82


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 180 RRNTDRNA*NLSNSTFYNYLTSHY 251
           RRN  + A  + N  FY++L++ Y
Sbjct: 234 RRNFSKQASEILNEYFYSHLSNPY 257


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 207  NLSNSTFYNYLTSHYLH 257
            N +  TF+N L   YLH
Sbjct: 1189 NRNEETFWNELIEQYLH 1205


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 207  NLSNSTFYNYLTSHYLH 257
            N +  TF+N L   YLH
Sbjct: 1189 NRNEETFWNELIEQYLH 1205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,603
Number of Sequences: 336
Number of extensions: 1596
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)