Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0797
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   4.1  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        27   5.4  
SB_260| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.5  

>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -1

Query: 306  YIPMPKSLSXSHSAN*CVNNVMLNNYKRLSLKDFTRFCLCFVLTLKIGIMRHAL-----L 142
            YIP+P+SL+    +  C     L N   +S K   R+    V    I +  +A      +
Sbjct: 1000 YIPLPRSLTRYARSFDCGERKWLTNGAEISWKMPGRYLTGNVFYTSISMWENAAKNCKQI 1059

Query: 141  NHTKYLQDESLKSVIQIKF 85
            N     +D+SLK V + +F
Sbjct: 1060 NRLTPNEDQSLKQVYKCRF 1078


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 108 LMIHPVNILYGLTGHVSLFQSLMLRRNT 191
           L I+P+ I YG +GH+ ++  ++  RN+
Sbjct: 784 LRIYPIIISYGNSGHLRIYPIIISHRNS 811



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 108 LMIHPVNILYGLTGHVSLFQSLMLRRNT 191
           L I+P+ I YG +GH+ ++  ++  RN+
Sbjct: 844 LRIYPIIISYGNSGHLRIYPIIISHRNS 871



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 108  LMIHPVNILYGLTGHVSLFQSLMLRRNT 191
            L I+P+ I YG +GH+ ++  ++  RN+
Sbjct: 981  LRIYPIIISYGNSGHLRIYPIIISHRNS 1008


>SB_260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 306 YIPMPKSLSXSHSAN*CVNNVMLNNYKRLSLKDFTR 199
           YIP+P+SL+    +  C     L N   +S KD T+
Sbjct: 65  YIPLPRSLTRYARSFDCGERKWLTNGAEISCKDATK 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,849,823
Number of Sequences: 59808
Number of extensions: 180310
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)