Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0797
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical p...    28   3.6  
AF016424-4|AAT68893.1|  152|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF016424-3|AAB65330.1|  251|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z72517-6|CAA96696.3|  261|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK1290.9 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 120 PVNILYGLTGHVSLFQSLMLRR 185
           P+ ++Y + GHV  F+ L+LR+
Sbjct: 78  PIGVMYDVLGHVDPFERLVLRK 99


>AF016424-4|AAT68893.1|  152|Caenorhabditis elegans Hypothetical
           protein F39G3.5b protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 54  LCRSLYRYNVRILSELHFLMIHPVNILYGLTGHVSLFQS 170
           L   LYRY+ +I+S+L    +H + I  G+T    +  S
Sbjct: 84  LAYRLYRYDAKIISKLLHTALHIIAIGLGITALTVIIMS 122


>AF016424-3|AAB65330.1|  251|Caenorhabditis elegans Hypothetical
           protein F39G3.5a protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 54  LCRSLYRYNVRILSELHFLMIHPVNILYGLTGHVSLFQS 170
           L   LYRY+ +I+S+L    +H + I  G+T    +  S
Sbjct: 84  LAYRLYRYDAKIISKLLHTALHIIAIGLGITALTVIIMS 122


>Z72517-6|CAA96696.3|  261|Caenorhabditis elegans Hypothetical
           protein T28F4.6 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 240 LNNYKRLSLKDFTR--FCLCFVLTLKIGIMRHALLNHTKYLQDESLKSVIQIKF*RYIYT 67
           L  +  L+   FTR  F +   L LK  +    +LN TK LQ  S++ +IQ    +  YT
Sbjct: 197 LRIFLSLANHSFTRVSFNVYIHLFLKKALENEGMLNTTKVLQIYSIREIIQCYSQKIKYT 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,118,852
Number of Sequences: 27780
Number of extensions: 140479
Number of successful extensions: 329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)