Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0796
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    29   0.54 
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    26   6.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.7  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -2

Query: 266 LLTYRRSVIKRILNMLLLA*PESIYLCKRIF*RNFYHLKMADEVENLRTYEWSMIL 99
           L+T  R+V +  LN+L+    +S  + ++   RNFY   +A  V  L    WS+IL
Sbjct: 375 LITMSRTVFR--LNVLMTKSMDSYVVYRKNMGRNFYVKCVASNVSMLSFLGWSLIL 428


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 103 YYNNGVLFSLTDDIQSCFFFVIKLYLYR 20
           YY +G   S T++ Q+   F I  YLY+
Sbjct: 94  YYGDGRSMSKTEEAQTIVTFTIGSYLYK 121


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -3

Query: 226  TCFYWLDLNLSIYVRESSNVIFIT*RWPMKLKICVRMNGQ*YYNNGVLFSLTDD 65
            T   W D   S+Y +++ N++F    + +++   +R N +    +GV ++LTD+
Sbjct: 1191 TTLEWEDTFPSVYSKDNPNLLFSMTGFEVRILPKIRQNEEFSLKDGV-WNLTDN 1243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,885
Number of Sequences: 5004
Number of extensions: 64672
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)