Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0796
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    29   3.5  
Z78414-2|CAB01668.3|  308|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 575 LNNYFQVN*WYFCRCYFN*TNNKHFSLLRRYDENIFDFHLANEMR 709
           + N F +N WYF + Y      ++ + L R ++++   H   +MR
Sbjct: 13  IKNVFDLNPWYFSKAY-----EEYLAFLHRLNDSVVGVHTTADMR 52


>Z78414-2|CAB01668.3|  308|Caenorhabditis elegans Hypothetical
           protein W09D12.2 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 241 ITLLRYVRSIPSKFRICAFFLYVYVSSQT*INLLHSLLSMNFIGINIKHY 390
           IT+ + +  +PS   +C FF+ +++      N  + L+ ++ I +NI  Y
Sbjct: 4   ITIFQMIYGVPSFCLMCFFFILIFIDRNNLSNPFYRLVQID-IFVNITCY 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,667,041
Number of Sequences: 27780
Number of extensions: 345807
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)