Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0795
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    76   1e-12
UniRef50_Q6KZF5 Cluster: Hypothetical membrane spanning protein;...    34   4.3  
UniRef50_Q29RB2 Cluster: Zgc:136851; n=5; Euteleostomi|Rep: Zgc:...    33   7.5  
UniRef50_Q4JZ28 Cluster: Oligosaccharide repeat unit polymerase ...    33   7.5  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 36/46 (78%), Positives = 40/46 (86%)
 Frame = +3

Query: 495 IIIV*LADPADFVVPQSINKRPKLLYEINLKQTKGIRPTWDTSKGK 632
           + ++ LADPADFVVPQSINKRPK LY+INLKQTKGIR T DTSK K
Sbjct: 17  LFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEK 62


>UniRef50_Q6KZF5 Cluster: Hypothetical membrane spanning protein;
           n=1; Picrophilus torridus|Rep: Hypothetical membrane
           spanning protein - Picrophilus torridus
          Length = 610

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
 Frame = -3

Query: 316 TFGPLTIFY*LLYVKSCNAFFSVII--INNSDVV-----LRS--IIYTINRISVLTIQAV 164
           TF PL I+Y ++ +   +AFF  +I    N+ +      L++  +IYTI  +   +   +
Sbjct: 83  TFLPLYIYYKIIILTGISAFFIYMIYKFRNNSIYSGFERLKNPVLIYTIITLVTFSGIIL 142

Query: 163 PNVRI---IG*HYIVDAICVISQFVKYVNSILGQDLNKLFIYFIIVIIDHTHTVL 8
            N+ I   IG  YI+D+   + +F+   N  + ++++ LF YF    +D++  ++
Sbjct: 143 ANIFIKYGIGDEYIIDSYASM-KFLSGKNPYIPENMSGLFSYFSNFNLDYSTPIM 196


>UniRef50_Q29RB2 Cluster: Zgc:136851; n=5; Euteleostomi|Rep:
           Zgc:136851 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 342

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 131 NIMLTNDPHVRHGLYRENRNTIYCVYNRPQND 226
           N++L N  H+R GLYR N+ T++ +   P  D
Sbjct: 48  NVILPNTTHLRTGLYRPNKPTVHHIKTEPGLD 79


>UniRef50_Q4JZ28 Cluster: Oligosaccharide repeat unit polymerase
           Wzy; n=1; Streptococcus pneumoniae|Rep: Oligosaccharide
           repeat unit polymerase Wzy - Streptococcus pneumoniae
          Length = 425

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -3

Query: 190 ISVLTIQAVPNVRII--G*HYIVDAICVISQFVKYVNSILGQDLNKLFIYFIIVIIDHTH 17
           +++LT+ A+ NVR    G  Y +    ++  F K + +  G +LNK   Y++I I+ H+ 
Sbjct: 149 LALLTMVAIVNVRFTTSGMRYHLAGAIIVFLFYKEIKN--GFELNKTLFYYLIPILIHSS 206

Query: 16  TVL 8
            V+
Sbjct: 207 AVI 209


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,965,209
Number of Sequences: 1657284
Number of extensions: 12618635
Number of successful extensions: 24849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24846
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)