Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0795
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    28   1.6  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   6.6  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   6.6  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   6.6  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 253 SVIIINNSDVVLRSIIYTINRISV-LTIQAVPNVRI 149
           S II NNS + LR+ IY++ R  +   ++ +P++R+
Sbjct: 344 SEIIFNNSPLTLRNSIYSLKRTDLPACLKELPSLRL 379


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 661 RKLNKHTNFVFPFDVSHV 608
           +K N HTN +F FDV  V
Sbjct: 339 QKQNNHTNTIFTFDVPQV 356


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 661 RKLNKHTNFVFPFDVSHV 608
           +K N HTN +F FDV  V
Sbjct: 259 QKQNNHTNTIFTFDVPQV 276


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 564 LLYEINL-KQTKGIRPTWD-TSKGKTKLVCLFNFRALSYLSTFLTFAG-LPQII 716
           +L  +NL KQ  G+R  WD   K K  +VC      L YL  F  F G +P+ I
Sbjct: 249 ILNNLNLIKQNVGLRHLWDYILKKKKSVVCHNGMADLVYL--FSLFEGKVPETI 300


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 128 NNIMLTNDPHVRHGL-YRENRNTIYCVYNRPQNDITIIDNY 247
           NNI    D   RH   Y +NRN +    +  QN +  +DNY
Sbjct: 27  NNIQQYKDETNRHQFEYNQNRNQLLRSIHIIQNLLNELDNY 67


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 661 RKLNKHTNFVFPFDVSHV 608
           +K N HTN +F FDV  V
Sbjct: 259 QKQNNHTNTIFTFDVPQV 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,312
Number of Sequences: 5004
Number of extensions: 56703
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)