Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0795
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018...    29   5.2  
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813...    28   9.1  
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557     28   9.1  

>08_02_0195 -
           14098865-14099083,14100209-14100352,14101820-14101833,
           14101919-14102006,14102303-14102426,14102959-14103068,
           14103142-14103348,14103441-14103568,14103781-14103892,
           14105678-14105695,14105917-14106109,14106274-14106359,
           14106494-14106582,14106817-14106863,14107424-14107534,
           14110252-14110318,14110419-14110509
          Length = 615

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 366 RPKYLKRNVFQTVRTSARLVH*PFSINYYMSNHVTRF 256
           R KY KRN+ ++  T  RL   P    YY   H+ RF
Sbjct: 73  RGKYTKRNITESTVTDVRLFPSPSKSIYYY-RHICRF 108


>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
            8136560-8136655,8136746-8136874,8136947-8137123,
            8137256-8137366,8138592-8138792,8139022-8139186,
            8139293-8139527,8139618-8139745,8139833-8139928,
            8140017-8140112,8140252-8140325,8140393-8140462,
            8140556-8140665,8140753-8140906,8141040-8141155,
            8141259-8141379,8141464-8141641,8142331-8142489,
            8142619-8142732,8142821-8143000,8143098-8143177
          Length = 1117

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 642  VCLFNFRALSYLSTFLTFAGLPQIIQDQIYPI 737
            VC+FN  +L      L  + LPQ I   +YP+
Sbjct: 1024 VCIFNASSLRLQCRILPASYLPQNISSNVYPV 1055


>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
          Length = 912

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 350 NAMYFKRYARRHVWSIDHFLL 288
           N  ++ R+ +RH+W + H++L
Sbjct: 160 NERFYHRFCKRHLWPLFHYML 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,210
Number of Sequences: 37544
Number of extensions: 317560
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)