Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0795
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    29   2.5  
At4g16730.1 68417.m02527 terpene synthase/cyclase family protein...    28   5.8  

>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 575 FIQKFRSFIYRLRHYEV---CRVS*LHNNYRVLDKCHRCALYLKAI 447
           F +KF  F+ ++ H +     + S L ++ R L KC +C  Y+K I
Sbjct: 583 FRRKFSYFVQQIEHMDALFEAQFSPLADSGRALSKCGKCLRYMKHI 628


>At4g16730.1 68417.m02527 terpene synthase/cyclase family protein
           similar to myrcene/ocimene synthase [GI:9957293];
           contains Pfam profile: PF01397 terpene synthase family
          Length = 547

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 679 DKYESARKLNKHTNFVFPFDVSHVGRIP---FVCFKFI 575
           D Y +  +L   TN V  +DV+HV R+P    +CF F+
Sbjct: 301 DIYGTLEELELFTNVVEKWDVNHVERLPNYMRMCFLFL 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,225,863
Number of Sequences: 28952
Number of extensions: 274485
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)