Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0794
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    30   0.25 
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      29   0.44 
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    28   1.0  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   1.8  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    27   3.1  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    26   4.1  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   5.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   5.4  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    25   9.5  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 GWLQKRGEHIRNWRDRYFILFDT 293
           GW++KR +    W+ RYF+L  T
Sbjct: 703 GWMRKRSDRYGVWKSRYFVLKGT 725


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 3   FLQGKNQIFSH*VICIQENVLYWCSAC 83
           F  G +++F+  + CI  + LYWC  C
Sbjct: 343 FCAGCSEVFNVNIPCIYRDDLYWCQTC 369


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 423 GLQWTTVIERNFSVDNEKEREEWVKAIR 506
           G +W T     F+++N+K  EEW K  R
Sbjct: 3   GSKWETEETNQFAIENQKLEEEWRKKRR 30


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 380 HGCGQTSPLHFYH 418
           HGC QT+P HF H
Sbjct: 144 HGCFQTAPFHFSH 156


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = +3

Query: 222 EGWLQKRGEHIRNWRDRYFILFDTGDLVGFKTQPERNNYRDPLNKFT--VRDCQIMAVDK 395
           +G+L ++G     WR RYF L  +  LV F+   +       L++ T  V D      ++
Sbjct: 585 DGYLCQQGGDCPYWRRRYFQLIGS-KLVAFQQFSKVRRATIDLSEATHIVDDNHYSDEEE 643

Query: 396 PRPYTFTIRGLQ--WTTVIERNFSVDNEKEREEWVKAIREVASQLS 527
              Y +   G +  ++     +F  +   E++EW+  +R+   Q S
Sbjct: 644 LEGYLYFESGFRIIFSNGDYIDFYAETVGEKDEWMSTLRQHLGQCS 689


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 231 LQKRGEHIRNWRDRYFILFDTGDLVGFKTQPERNNYRDPLNKFTV 365
           +Q+  E +  +   YF+ F +     F+  PE  NY +PLN + V
Sbjct: 529 VQEAREKVELFGSYYFVCFRS-----FEQDPELANYLEPLNMYIV 568


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 293 GGPGGLQDPAGAEQLQGPSQQVHRTRLP 376
           G P      A A+Q Q   QQ+HRT  P
Sbjct: 440 GNPQAFSQQAFAQQQQQQQQQLHRTSNP 467


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 649 STFTNSNFXKVMRRGSRKLVPSCAMSRSSASDIDAE 542
           ST  +SN  K +     +L+PS   S  SA + DA+
Sbjct: 387 STILDSNELKDIYLSKNRLIPSVTKSLPSAMEFDAD 422


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 246 EHIRNWRDRYFILFDTGDLVGFKTQPERNNYRD 344
           +HI NW  R +   +   +VG +  P+R ++ D
Sbjct: 236 KHINNWIPREYRKRNIRLIVGIEADPDRPDWND 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,926
Number of Sequences: 5004
Number of extensions: 45180
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)