Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0794
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)                     43   2e-04
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)                      39   0.003
SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)                    39   0.004
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     39   0.004
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_690| Best HMM Match : GCS (HMM E-Value=0)                           36   0.038
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              35   0.050
SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3)                     29   2.5  
SB_51338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_55779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)            29   4.3  
SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)                     28   5.7  
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               28   7.6  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                28   7.6  

>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
          Length = 998

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 45/95 (47%)
 Frame = +3

Query: 219 KEGWLQKRGEHIRNWRDRYFILFDTGDLVGFKTQPERNNYRDPLNKFTVRDCQIMAVDKP 398
           KEG+L K+GE  R ++ R+F+L   G+L+ +    ER   +DP+    + +C +   +  
Sbjct: 292 KEGYLNKKGELNRGYQRRWFVL--KGNLLYYF---ERRLDKDPIGVIILENCNVELAESG 346

Query: 399 RPYTFTIRGLQWTTVIERNFSVDNEKEREEWVKAI 503
            PY F I               D  ++ E W+K +
Sbjct: 347 EPYAFQI-NFAGAGARVYVLGADTPEDMEAWMKVL 380


>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
          Length = 1030

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = +3

Query: 219 KEGWLQKRGEHIRNWRDRYFILFDTGDLVGFKT---QPERNNY 338
           KEG+L K G  I+NW+ R+F+L D G L  FKT    P+R  Y
Sbjct: 641 KEGYLTKLGGRIKNWKKRWFVLQD-GKLYYFKTPVATPKRTYY 682


>SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)
          Length = 501

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = +3

Query: 216 VKEGWLQKRG-EH--IRNWRDRYFILFDTGDLVGFKTQPERNNYRDPLNKFTVRDCQIMA 386
           +  G+L+K   EH  +R+W+ R+F+L     L  +K++ ++   +DP++  T R  +   
Sbjct: 7   IYHGFLKKSPPEHRLMRSWQRRFFVLRSNKKLFYYKSEKDKKPVKDPIDLHTCRCVEANL 66

Query: 387 VDKPRPYTFTIRGLQWTTVIERNFSVDNEKEREEWVKAI 503
                PY F++  +  T  +      D+++  + WV+ +
Sbjct: 67  QHNKFPYVFSVNTVNRTYYM----VADSQEIMDTWVEKL 101


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 216 VKEGWLQKRGEHIRN-WRDRYFILFDTGD 299
           +K GWL+K     +N W+DRYF+L+  GD
Sbjct: 4   IKSGWLKKLSGFFKNTWKDRYFVLYQNGD 32


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
 Frame = +3

Query: 315  TQPERNNYRDPLNKFTVR---DCQIMAV-----DKPRPYTFTIRGLQWTTVIERNFSVDN 470
            ++P+RN+Y  P  K  +R   D   MAV     D   P TF I   Q   V++  FS + 
Sbjct: 1188 SRPDRNDYF-PTGKLKMRITMDVDGMAVGDAGEDIDEPNTFRITSKQ--RVVD--FSAET 1242

Query: 471  EKEREEWVKAIREVASQ 521
            E E+E+W+KA+ +V ++
Sbjct: 1243 EDEKEQWIKAVSDVIAE 1259


>SB_690| Best HMM Match : GCS (HMM E-Value=0)
          Length = 560

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
 Frame = +3

Query: 216 VKEGWLQKRGEHIRNWRDRYFILFDTGDLVGFKTQPERNNYRDPLNKFTVRDCQIMAVDK 395
           ++EG +QKRG   + WR RY +L     L  FK + +    R     F +    I  +DK
Sbjct: 12  LREGIVQKRGNVFKKWRFRYLVL-TRDTLCIFKKEEDEKRGRTEGRIFVM---DIADIDK 67

Query: 396 PRPYTFTIRGLQWTTVIERN---FSVDNEKEREEWVKAIREVAS 518
              Y    +   +  V E     F   +E +RE W++AI+   S
Sbjct: 68  ---YNSKKKDFSFYLVAEGRTYYFCCASEIDRELWMRAIKSARS 108


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 216 VKEGWLQKRGEHIRNWRDRYFILFDTGDLVGFKTQPERNNYRD 344
           +K+G+L K+G  ++NW+ RYF L    DLV F    +   Y D
Sbjct: 574 IKDGYLVKKGAVVKNWKKRYFKL----DLVKFSYYEKDTAYTD 612


>SB_15540| Best HMM Match : DUF29 (HMM E-Value=1.3)
          Length = 150

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +3

Query: 216 VKEGWLQKRGEHIRNWRDRYFIL 284
           +K+G+L K+G  +++ +DR+F+L
Sbjct: 101 IKQGYLIKKGHMVKSMKDRWFVL 123


>SB_51338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 125 QTCGPHGQQFVIKQLVARREGHGDGGARDHREGRMAAET-W*THPELARSVLHIVRHGG 298
           QTC PHG+  V+ +   RR  +  GG   ++  R    T W     +  +V   + HGG
Sbjct: 314 QTCIPHGELLVLSRSTCRR-AYPMGGCWSYQGQRADVHTPWGVAGPMKVNVQTCIPHGG 371


>SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 203 ARDHREGRMAAETW*THPELARSVLHIVRHGGPGGLQDPAGAEQLQGPSQQVHRTRLPD 379
           A +   GR  AE W       +  L +V+H G     +P G E L+  ++ +H T +P+
Sbjct: 244 AHEPEPGRRLAE-WNRLNRAEKEALRVVQHVGSPVASEPQGREGLRARAEDIH-TPVPE 300


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 453 NFSVDNEKEREEWVKAIREVASQLST 530
           N S D E ER+ WV AI+ + S   T
Sbjct: 288 NLSADTENERQMWVDAIQSIVSMPMT 313


>SB_55779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 647 HXHEFEFX*GDAAGVTEAGAELCHVAIVSIGHRC 546
           + H++EF  G   G  E  +E+ HVA     HRC
Sbjct: 20  YDHDYEFELGTHVGTDEGVSEVLHVAGEKRLHRC 53


>SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)
          Length = 706

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 125 QTCGPHGQQFVIKQLVARREGHGDGGARDHREGRMAAET-W*THPELARSVLHIVRHGG 298
           QTC PHG+  V+ +   RRE +  G    ++  R    T W     +  +V   + HGG
Sbjct: 159 QTCIPHGELLVLSRSTCRRE-YPMGSCWSYQGQRADVSTPWGVAGPIKVNVQTCIPHGG 216


>SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)
          Length = 369

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 225 GWLQKRGEHIRNWRDRYFIL 284
           G+L KRG   + W+ R+F+L
Sbjct: 214 GYLHKRGHLFKQWKSRWFVL 233


>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 326  AEQLQGPSQQVHRTRLPDHGCGQT-SPLHFYHT 421
            A + +GP++  +RT  P HG  +T  P H Y T
Sbjct: 1240 AYRTEGPTRGAYRTEGPTHGAYRTEGPTHGYST 1272


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 326 AEQLQGPSQQVHRTRLPDHGCGQT-SPLHFYHT 421
           A + +GP++  +RT  P HG  +T  P H Y T
Sbjct: 637 AYRTEGPTRGAYRTEGPTHGAYRTEGPTHGYST 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,298,112
Number of Sequences: 59808
Number of extensions: 400199
Number of successful extensions: 1015
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)