Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0791
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 71 1e-13
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 71 1e-13
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 71 1e-13
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 38 7e-04
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.044
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 5.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.0
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 5.0
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 6.7
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 24 8.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 70.5 bits (165), Expect = 1e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +1
Query: 7 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
+VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 402 MVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 70.5 bits (165), Expect = 1e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +1
Query: 7 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
+VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 402 MVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 70.5 bits (165), Expect = 1e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +1
Query: 7 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
+VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 402 MVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 37.9 bits (84), Expect = 7e-04
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +1
Query: 22 PLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 123
P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 628 PVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.044
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 22 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 114
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 246 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 341
G S E S+ IFY FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 179 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 69
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 152 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 30
+ L P +S + TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 180 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 284
+ +A A+N +I TT + K + E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 393 IYTLVCSHNKMFQIYYV*PY-INYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVSQLY 217
++TL+ SHN + ++Y Y + + +L+ K ++ + + L F S HL ++
Sbjct: 290 LFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDL--FLSSTHLPATLIASFI 347
Query: 216 EKL 208
++L
Sbjct: 348 KRL 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,214
Number of Sequences: 5004
Number of extensions: 24822
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -