Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0791
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           69   2e-12
03_01_0547 + 4093196-4093657,4094267-4095148                           69   2e-12
03_01_0544 + 4082528-4082989,4083585-4084466                           69   2e-12
03_01_0543 + 4076981-4077442,4078145-4079026                           69   2e-12
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    34   0.058
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165...    32   0.23 
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558...    32   0.23 
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299...    31   0.41 
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     29   2.2  
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581...    27   5.0  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    27   6.6  
09_04_0400 + 17296414-17296854,17299212-17299403                       27   8.7  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
           V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
           V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
           V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
           V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 33.9 bits (74), Expect = 0.058
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 19  KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
           K +CVE F     LGR  +R    T+AVG++  V
Sbjct: 617 KEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650


>04_04_1015 -
           30115377-30115477,30115570-30115615,30116491-30116590,
           30116676-30116771,30119519-30119556,30119623-30119733,
           30119820-30119951,30120024-30120263,30120532-30120700,
           30120994-30121493,30121581-30121691,30121802-30122133,
           30122603-30122737,30122839-30122988,30123809-30123947
          Length = 799

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 111
           V +    P+CV+ F +   LGR  +R    T+AVGV+
Sbjct: 635 VQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671


>04_04_1008 -
           30054674-30054774,30054867-30054912,30055788-30055887,
           30055973-30056068,30058816-30058853,30058920-30059030,
           30059117-30059248,30059321-30059560,30059829-30059997,
           30060291-30060790,30060878-30060988,30061099-30061430,
           30061900-30062034,30062136-30062285,30063106-30063244
          Length = 799

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 111
           V +    P+CV+ F +   LGR  +R    T+AVGV+
Sbjct: 635 VQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671


>04_03_0107 +
           11328267-11328276,11329059-11329170,11329862-11329907,
           11330185-11330256,11332292-11332303,11332880-11332942,
           11333038-11333192,11333303-11333367,11334645-11334795,
           11335230-11335335,11335440-11335575,11336310-11336374,
           11337003-11337188,11337298-11337399
          Length = 426

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 25  LCVESFQEFPPLGRFAVR 78
           +C+E+F +FP LGRF +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 330 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 250
           N   M    PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684


>01_06_0575 -
           30357556-30357582,30357698-30357944,30358039-30358161,
           30358275-30358301,30358475-30358633,30359764-30359948,
           30360225-30360293,30360432-30362354,30363018-30363339,
           30363506-30363543
          Length = 1039

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 113 LMTPTATVCLMSRTAKRPRGGNSWKDST 30
           LM  T +VC  S+  + P  G  W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 179 PLVAFSAALVTLPPPA-SLKLTALMTPTATVCLMSRTAK-RPRGGNSW 42
           P  A    L +L PP  +   T+L+TP A   L+S   + R RG +S+
Sbjct: 40  PRAAILRWLASLSPPCRAAAATSLLTPAAAAALLSMLRRLRARGHSSF 87


>09_04_0400 + 17296414-17296854,17299212-17299403
          Length = 210

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 197 SSSYFLPLVAFSAALVTLPPPASLKLTALMTP 102
           SSS+  P ++FS+     PPP + +  A+  P
Sbjct: 16  SSSFMAPRISFSSDFALEPPPPAQQQPAVRAP 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,663
Number of Sequences: 37544
Number of extensions: 156121
Number of successful extensions: 521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)