Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0791
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 72 2e-13
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 72 2e-13
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 72 2e-13
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 1.5
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 1.5
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 27 5.9
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 5.9
AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical... 27 7.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 368 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 120
+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 491 MRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -3
Query: 236 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 81
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -3
Query: 182 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 30
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 261 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 368
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 122 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 21
+ AL P T ++CL + K P GN+ D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 216 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 332
H TA L S K V+ K+ F+ + ++ C+ LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145
>AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical
protein Y47G6A.31 protein.
Length = 212
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 321 FYNLYKVIHNISETFCYDC 377
F +L K++ N TFCY C
Sbjct: 44 FQHLPKLLENCGHTFCYSC 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,467,198
Number of Sequences: 27780
Number of extensions: 143836
Number of successful extensions: 391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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