Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0791
(436 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 69 1e-12
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 69 1e-12
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 69 1e-12
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 69 1e-12
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 65 2e-11
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 38 0.002
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 33 0.11
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 1.8
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 28 3.1
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 3.1
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 27 5.5
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 7.2
At1g71970.1 68414.m08319 expressed protein 26 9.5
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 123
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 123
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 123
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 123
V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 65.3 bits (152), Expect = 2e-11
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +1
Query: 1 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 56 INMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 25 LCVESFQEFPPLGRFAVRDMRQTVAVGVI 111
+C+E F +FP LGRF +R +T+AVG +
Sbjct: 494 ICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 22 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 120
P+CVE+F E LGR +R +TVA+G + +
Sbjct: 631 PVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 291 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 389
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 275 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 99
+C L + + +K R C+ A N + F+ F A L+TLPPP+ P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511
Query: 98 ATVCLMS 78
A +M+
Sbjct: 512 APGAMMT 518
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 291 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 389
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 27.1 bits (57), Expect = 5.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 345 HNISETFCYDCKLKCKF 395
+ ++ FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 212 NCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVC 87
+ +SSS+ PL++ S++ T P P S A + PT +C
Sbjct: 106 SATTSSSSHSQPLLSSSSSSATSPAPTS---PANVLPTGNIC 144
>At1g71970.1 68414.m08319 expressed protein
Length = 225
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 230 YRSCMKNCAVNSSSYFLPLVAFSAALVTLPP 138
Y SC + CAV S +LP +A+ L P
Sbjct: 191 YGSCRRTCAVTESIVYLPRARKAASYDNLLP 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,868,780
Number of Sequences: 28952
Number of extensions: 127183
Number of successful extensions: 371
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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