Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0790
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17; Cand...    36   1.1  
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...    33   5.7  
UniRef50_Q4UFK6 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  
UniRef50_A5KAF2 Cluster: Protein kinase domain containing protei...    33   9.9  

>UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17;
           Candidatus Carsonella ruddii|Rep: DNA-directed RNA
           polymerase - Carsonella ruddii
          Length = 1292

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 27/79 (34%), Positives = 42/79 (53%)
 Frame = +1

Query: 400 NLILYCLWVKTAQ*ICTYVSRYSYGVD*VKFKYDYLVYFGYLLNNIIKLSHESRLIESKC 579
           +L++Y +  KT   I  +++ Y   V+  K  Y  L+ F   L N I L  E+ LI++K 
Sbjct: 738 DLVIYKIDCKTKTGIKIFLNSYFTLVELYKNLYGRLLLFSVSLKNKILLK-ENTLIDNKV 796

Query: 580 IYLANIKKIYCIFII*VKF 636
           ++L   KKI  IF+  V F
Sbjct: 797 LFLLIKKKINTIFVRSVLF 815


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -1

Query: 345 LFINSHHLQNPFQYNLNFCEHY*NYLM-YIWNKYF 244
           +F+N ++ Q+  +YNLN+ ++Y N LM +++NK +
Sbjct: 279 MFMNMYNQQDKIRYNLNYIKYYINLLMQFLFNKNY 313


>UniRef50_Q4UFK6 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1642

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 627 LYNKNTVDFLDISQI-NTLAFN*SRFMAKFDNVI 529
           +YNKN + F +I+ I NTL FN   F   F+N+I
Sbjct: 120 IYNKNEIKFYNINNIINTLQFNNLLFKLYFNNII 153


>UniRef50_A5KAF2 Cluster: Protein kinase domain containing protein;
           n=1; Plasmodium vivax|Rep: Protein kinase domain
           containing protein - Plasmodium vivax
          Length = 2781

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 210 KIYSENSGNIEKNIYSKCTLSSFSNVHRNLNYIEMDFVNGVN 335
           K YS NS    KN Y K  L S +++H NLN+  +   N +N
Sbjct: 359 KNYSNNSSPY-KNDYFKYNLQSVNSIHNNLNFSNISNSNNMN 399


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,158,627
Number of Sequences: 1657284
Number of extensions: 12373013
Number of successful extensions: 27063
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27001
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)