Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0790
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    27   3.8  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   6.6  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    25   8.7  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   8.7  

>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 705 HRVLXPXVFCSDXL--MRTVNTXK*KLHLYNKNTVDFLDISQINTLAFN 565
           H  L   + CS  +  +  +   K KLHL++ + + FLD S  ++  FN
Sbjct: 104 HSELAWLLACSTSMGQLNRMTQWKSKLHLHDHDDLSFLDASATSSTRFN 152


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 568 ESKCIYLANIKKIYCIFII*VKFSFXRVHSS 660
           ES C YLANI  + CI     K  F +V  S
Sbjct: 5   ESICWYLANILLVTCIGYYSYKTPFTKVEES 35


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 300 LNFCEHY*NYLMYIWNKYFFQYYQN 226
           LN+ E +  YL+   ++YF + YQN
Sbjct: 302 LNYIEEFLKYLVLHKDEYFIKEYQN 326


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 249 YFFQYYQNFRNISSSVSPLFLQATDMARGIPENIPK 142
           Y+F Y  N R  +S +  L +    +A  + + +PK
Sbjct: 449 YWFTYGINLRAFASYICGLLINVVGLAGAVGDKVPK 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,174
Number of Sequences: 5004
Number of extensions: 59232
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)